Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan11g2213 ATGGAGCTGACTACTCAAGATCCTCCCATTCCCATTCCCATCCCTATTCCAATCCCTTTAAATAGTCGTTACGCCGGCCACGACCACGACCATCTCATCCACCACCACCACCATGACTCCTCCTCCACTCGCAACCACATCATTGCCGCTACAACTACAGTCAATGGTGGTAGTCCACTCCCAACCTCTCAAATGGAAGCGAATCTCCACCACCACCATAACAATAACAACAACAACAACAAAAAACATGTCAAATACAAAGAGTGTCTCAAAAACCACGCAGCCTCCATGGGAGGCAATGCCACGGATGGCTGCGGTGAGTTCATGCCAAGTGGAGAAGAAGGCTCTATTGAAGCCCTCACATGCTCCGCCTGCAATTGTCATAGAAACTTCCATCGAAAAGAGATCGACGGGGAGCCTTACGATTGGCTCCACCACCCCTCGCGCCTTGGTCGCAAGCTCCTCGTCGGTGGGAAGAACATGATCGCCCCACCAGAAGCCACTGCATTCGCCTACCCGACTGCAGCAGGGGCAACGTTCCTATCATCCAGAGCACAACCTCACCACATGATAATGTCATACAACATGGTCGGTGGCGGGCACTCAGAGTCGGAGGAGCAGGAGGAGGCGGGCACCGGGAATAGGTCGTATTCAGGGCAAATGATGATGAATAAGAAGCGTTTCCGAACGAAGTTCACGGCGGAGCAGAAGGAGAAGATGCTGAGGTTTGCAGAGAAAGTTGGATGGAAGATTCAGAAGCAAGAGGAGAGTGTGGTGCAGCAATTCTGTCAAGAGATTGGAGTAAAGAGGAGAGTTCTTAAGGTTTGGATGCATAACAACAAGCACAATCTTGCCAAGAAGGAAACCATTTCCCCTTCCCATTCTCCCACTCCCTTAAATTAA 903 50.72 MELTTQDPPIPIPIPIPIPLNSRYAGHDHDHLIHHHHHDSSSTRNHIIAATTTVNGGSPLPTSQMEANLHHHHNNNNNNNKKHVKYKECLKNHAASMGGNATDGCGEFMPSGEEGSIEALTCSACNCHRNFHRKEIDGEPYDWLHHPSRLGRKLLVGGKNMIAPPEATAFAYPTAAGATFLSSRAQPHHMIMSYNMVGGGHSESEEQEEAGTGNRSYSGQMMMNKKRFRTKFTAEQKEKMLRFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNKHNLAKKETISPSHSPTPLN 300
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 61205966 61207362 - Tan0002715.1 Tan11g2213 769150

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan11g2213 300 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 86 135 IPR006456 -
Tan11g2213 300 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 85 136 IPR006456 -
Tan11g2213 300 MobiDBLite consensus disorder prediction 58 81 - -
Tan11g2213 300 NCBIfam homeobox domain, ZF-HD class 225 281 IPR006455 -
Tan11g2213 300 MobiDBLite consensus disorder prediction 58 74 - -
Tan11g2213 300 Pfam ZF-HD protein dimerisation region 84 136 IPR006456 -
Tan11g2213 300 SUPERFAMILY Homeodomain-like 214 286 IPR009057 -
Tan11g2213 300 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 66 283 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER)
Tan11g2213 300 MobiDBLite consensus disorder prediction 199 218 - -
Tan11g2213 300 Gene3D - 209 287 - -
Tan11g2213 300 FunFam Zinc-finger homeodomain protein 2 212 286 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan11g2213 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g2444 Tan-Chr2:93022400 Tan11g2213 Tan-Chr11:61205966 7.70E-44 dispersed
Tan03g1984 Tan-Chr3:74903103 Tan11g2213 Tan-Chr11:61205966 1.00E-42 dispersed
Tan05g2155 Tan-Chr5:72287668 Tan11g2213 Tan-Chr11:61205966 3.10E-31 dispersed
Tan07g1215 Tan-Chr7:49924779 Tan11g2213 Tan-Chr11:61205966 4.90E-37 dispersed
Tan11g0514 Tan-Chr11:4353834 Tan11g2213 Tan-Chr11:61205966 3.80E-35 dispersed
Tan11g2213 Tan-Chr11:61205966 Tan03g1814 Tan-Chr3:73750807 1.10E-41 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan02g2444 . 58 245 ZF-HD Transcription Factor Family AT5G65410 55.8 6.1e-45 178.7
Tan01g1432 . 54 234 ZF-HD Transcription Factor Family AT5G65410 56.4 8.7e-44 174.9
Tan02g2444 . 1 241 ZF-HD Transcription Factor Family AT4G24660 51.7 1.2e-54 210.7
Tan02g1974 . 64 287 ZF-HD Transcription Factor Family AT4G24660 51.3 8.8e-50 194.5
Tan11g2213 . 84 287 ZF-HD Transcription Factor Family AT2G02540 53.2 1.5e-52 204.1
Tan11g2213 . 84 290 ZF-HD Transcription Factor Family AT1G14440 56.6 1.2e-57 221.1
Tan01g1242 . 65 237 ZF-HD Transcription Factor Family AT2G18350 51.3 1.3e-44 177.6
Tan11g0514 . 17 269 ZF-HD Transcription Factor Family AT5G15210 56.5 8.5e-52 201.4
Tan07g1215 . 22 269 ZF-HD Transcription Factor Family AT5G15210 56.2 1.0e-49 194.5
Tan11g0514 . 10 271 ZF-HD Transcription Factor Family AT3G28920 60.0 4.0e-61 232.6
Tan07g1215 . 22 263 ZF-HD Transcription Factor Family AT3G28920 65.5 8.2e-59 224.9
Tan11g0514 . 12 275 ZF-HD Transcription Factor Family AT5G39760 53.7 4.0e-51 199.5
Tan07g1215 . 30 261 ZF-HD Transcription Factor Family AT5G39760 60.2 8.3e-49 191.8
Tan11g0514 . 73 272 ZF-HD Transcription Factor Family AT1G69600 50.7 1.5e-47 187.2
Tan04g1081 . 1 194 ZF-HD Transcription Factor Family AT1G69600 52.9 2.1e-46 183.3
Tan11g2213 . 84 287 ZF-HD Transcription Factor Family AT2G02540 53.2 1.5e-52 204.1
Tan02g2444 . 1 241 ZF-HD Transcription Factor Family AT4G24660 51.7 1.2e-54 210.7
Tan02g1974 . 64 287 ZF-HD Transcription Factor Family AT4G24660 51.3 8.8e-50 194.5
Tan11g0514 . 12 275 ZF-HD Transcription Factor Family AT5G39760 53.7 4.0e-51 199.5
Tan07g1215 . 30 261 ZF-HD Transcription Factor Family AT5G39760 60.2 8.3e-49 191.8
Tan01g1242 . 65 237 ZF-HD Transcription Factor Family AT2G18350 51.3 1.3e-44 177.6
Tan02g2444 . 58 245 ZF-HD Transcription Factor Family AT5G65410 55.8 6.1e-45 178.7
Tan01g1432 . 54 234 ZF-HD Transcription Factor Family AT5G65410 56.4 8.7e-44 174.9
Tan11g0514 . 73 272 ZF-HD Transcription Factor Family AT1G69600 50.7 1.5e-47 187.2
Tan04g1081 . 1 194 ZF-HD Transcription Factor Family AT1G69600 52.9 2.1e-46 183.3
Tan11g0514 . 17 269 ZF-HD Transcription Factor Family AT5G15210 56.5 8.5e-52 201.4
Tan07g1215 . 22 269 ZF-HD Transcription Factor Family AT5G15210 56.2 1.0e-49 194.5
Tan11g2213 . 84 290 ZF-HD Transcription Factor Family AT1G14440 56.6 1.2e-57 221.1
Tan11g0514 . 10 271 ZF-HD Transcription Factor Family AT3G28920 60.0 4.0e-61 232.6
Tan07g1215 . 22 263 ZF-HD Transcription Factor Family AT3G28920 65.5 8.2e-59 224.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010486 1 0 1 1 1 1 2 1 1 0 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 0 1 1 1 32
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28814 PF04770 ZF-HD_dimer 3.00E-29 No_clan Tan TF