Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan11g2250 ATGGTGTTCCAAGATTTCGACCAAATCTCCGAACGCCGACGTGCGGAGAGAGCACGCAAATTCCGACAGAGGGTGATCATCGGTGTGGTTTCGGCGACGGTGATCCTTGTAGTAGTAGCGGGGGCGGTGTTCATGCAAGTTTCGTCTTCGGCGAAATCAAGCAGCGACAAAGAGAGTGGCAGTAGCAATAATGGGAACTCGAAACAAGGTGATACACCAGACACGAAACAGGTATCCCGCGTGGAGAAAATGATTGTGATGATATGCAACTCCACAGAGTATAAAGGCAAATGCGAGAGCACTTTGAAGGATGGGGTCCACACCGATCCAAACTCCTCTGACCCTAAAGACCTTATAAAGCTGGCGATCTCTGCAGCGGCTACGGAGGTTAAATCGGCGGTCAAAAAAGCGAGCGGGTTCAACTTCGGAAGCCCTGAGGAAAAAGGTGCATTCGAAGACTGCAAGGTGCTTTTGGAAGACGCGGTTGAGGAATTAGAGAATTCTGTGAGCGAAGTGAGCAAGAAGAATCTAGGAAAGCTGACTTCCAAAACGACGCCGGATCTGAACAACTGGCTGAGCGCTGTGATGTCTTATCATGAAACTTGCGTAGATGGATTTCCAGATGGGAAGATGAAGATTGAAATGGAGAACGCAGTGAAGGCTGGTAAGGAACTAACGAGTAATTCTTTGGCCATGATTTCGCAGGTTTCTTCCTTCTTCTCTACGTTTGACATTCCTGATGGGGAAGGAGCTGCAACACGACGTCGTCTAATGGCCATGGGTAAAGATGCTATTCCTACTTGGATGAGCAGCAACGAAAGGAGGATTTTGAAGAGCGCTACGGCTGGGGATAAGCCTAAGCCTAATGTTGTGGTTGCCAAAGATGGGTCTGGAGATTTCAAAACTATTAACGAAGCCTTGAGTAAGATGCCTGACAAATATGATGGGCGGTACGTGATCTATATTAAGGAAGGGATCTACGAGGAGACAGTGGTAATTACGAAAAAGATGGTGAATGTTACAATGTACGGAGATGGATCTCAGAAGAGCATGATCAGTGGGAGCAAGAACTTTGTGGACGGTGTTAGAACCTTCCAGACGGCAACATTTGTGGCACTTGGAGACGGGTTCCTGGGTCAAGCCATTGGATTCCGAAACACTGCAGGTCCAGAAAAGCACCAAGCGGTGGCGGCCAGAGTCCAAGCAGATCGAGCCATATTCGTGAACTGTCGGTTCGAGGGGTACCAAGACACGTTATACGCCCAAGCCCATCGTCAGTTCTACAGAAGCTGTTTGATAACAGGAACAATCGACTTCATATTCGGAGACGCTGCAGCCATTTTCCAAAACTGCAACATGATGATTCGAAAGCCATTAGACAACCAACAAAACATAGTAACAGCACAAGGGCGAACCGACAAACATGAAACCACAGGCATAGTTATTCAAAACTGCAAGATTTTACCGGATAAGAGTCTTGAACCTGTTAAGGCCCAGTTCAAAAGCTACTTGGGTAGGCCTTGGAAAGAGTTTTCTAGAACCATTGTCATGGAGTCCACAATTGAAGATATCATTCATCCTGATGGTTGGATGCCTTGGGAAGGGGATTTTGCACTCAAAACCTTGTACTATGCTGAATTTAACAACGAAGGCCCTGGGTCTAAGACCGATGCCAGAGTCAAATGGCCTGGTTACAAGCTCATTGATAAGGAAGAGGCTGCAAAGTTTACAATAGGAACTTTTCTAGAGCTGGATTGGATCGAGAGCTCGGCCGTTCCTGTTCATGCCGGCCTATTTTGA 1800 47.22 MVFQDFDQISERRRAERARKFRQRVIIGVVSATVILVVVAGAVFMQVSSSAKSSSDKESGSSNNGNSKQGDTPDTKQVSRVEKMIVMICNSTEYKGKCESTLKDGVHTDPNSSDPKDLIKLAISAAATEVKSAVKKASGFNFGSPEEKGAFEDCKVLLEDAVEELENSVSEVSKKNLGKLTSKTTPDLNNWLSAVMSYHETCVDGFPDGKMKIEMENAVKAGKELTSNSLAMISQVSSFFSTFDIPDGEGAATRRRLMAMGKDAIPTWMSSNERRILKSATAGDKPKPNVVVAKDGSGDFKTINEALSKMPDKYDGRYVIYIKEGIYEETVVITKKMVNVTMYGDGSQKSMISGSKNFVDGVRTFQTATFVALGDGFLGQAIGFRNTAGPEKHQAVAARVQADRAIFVNCRFEGYQDTLYAQAHRQFYRSCLITGTIDFIFGDAAAIFQNCNMMIRKPLDNQQNIVTAQGRTDKHETTGIVIQNCKILPDKSLEPVKAQFKSYLGRPWKEFSRTIVMESTIEDIIHPDGWMPWEGDFALKTLYYAEFNNEGPGSKTDARVKWPGYKLIDKEEAAKFTIGTFLELDWIESSAVPVHAGLF 599
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 63415248 63417047 - Tan0002306.1 Tan11g2250 769187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan11g2250 599 MobiDBLite consensus disorder prediction 51 77 - -
Tan11g2250 599 NCBIfam pectinesterase inhibitor domain 81 236 IPR006501 GO:0004857(InterPro)
Tan11g2250 599 PANTHER PECTINESTERASE 27 589 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Tan11g2250 599 Gene3D Invertase/pectin methylesterase inhibitor family protein 81 237 IPR035513 -
Tan11g2250 599 Pfam Plant invertase/pectin methylesterase inhibitor 84 232 IPR006501 GO:0004857(InterPro)
Tan11g2250 599 Coils Coil 155 175 - -
Tan11g2250 599 Gene3D - 283 598 IPR012334 -
Tan11g2250 599 Pfam Pectinesterase 289 583 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Tan11g2250 599 CDD PMEI-like_3 88 238 - -
Tan11g2250 599 SUPERFAMILY Pectin lyase-like 286 583 IPR011050 -
Tan11g2250 599 FunFam Pectinesterase 283 598 - -
Tan11g2250 599 FunFam Pectinesterase 81 237 - -
Tan11g2250 599 ProSitePatterns Pectinesterase signature 2. 433 442 IPR033131 -
Tan11g2250 599 SMART PMEI_2 80 232 IPR006501 GO:0004857(InterPro)
Tan11g2250 599 MobiDBLite consensus disorder prediction 51 74 - -
Tan11g2250 599 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 83 237 IPR035513 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan10g1033 Tan-Chr10:9186330 Tan11g2250 Tan-Chr11:63415248 1.20E-137 dispersed
Tan11g0483 Tan-Chr11:4077134 Tan11g2250 Tan-Chr11:63415248 1.30E-43 dispersed
Tan11g1660 Tan-Chr11:16026391 Tan11g2250 Tan-Chr11:63415248 2.30E-115 dispersed
Tan11g1757 Tan-Chr11:18067381 Tan11g2250 Tan-Chr11:63415248 9.60E-108 dispersed
Tan11g2250 Tan-Chr11:63415248 Tan06g2699 Tan-Chr6:79431027 2.60E-138 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan11g2250 - - - 0.0