Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g10 ATGGTTGCTTCAAAGGGTTTCTACTGTTTGTTTCTCCAACTGCTGTTGCTGTCTTTCGTCTTTGATGTGGCCAATTCCCAGGGCTTGAAGGTAGGGTTTTACAGAAAGACATGCCCCAATGCTGAAGCCATAGTTAAGAAGGTAGTAGATCAAGCCATGTCCGTCGCCCCAAGTCTTTCTGGGCCTTTGTTGAGAATGCATTTCCATGATTGTTTCGTCAGGGGCTGTGAGGGTTCAGTGCTGCTAAACTCATCGACACAGCAAGCTGAAAAAGATGCATTTCCAAACTTAAGCCTTAGAGGATATCAAGTTATTGATAGAGTCAAGTCTGCATTAGAAAAAGCATGTCCTGGAGTGGTTTCATGCTCTGACATCTTAGCCCTAGTAGCTAGAGATGTGGTCGTCGCGATGAAAGGACCATCCTGGAAAGTTGAAACTGGAAGAAGAGATGGAAGGGTGTCAAATATTACAGAGGCCTTAACAAATCTTATACCGCCTACTGCAAACATAACCCAATTGAAATCAGGGTTTCAACAAAGGGGTCTAAGTGTAAAAGACCTAGTGGTGTTATCAGGTGGGCACACCCTTGGGACTTCTCACTGCTCCTCCTTCTCAAGCCGCCTTTACAACTTCACTGGAAAGGGCGACACTGATCCGGATTTGGATCCAAAGTACATAGCAAAGTTGAAAAACAAATGCAAGCAAGGAGATGCCAATTCACTTAAGAGGGCTTTTTGTGTCTGA 744 44.62 MVASKGFYCLFLQLLLLSFVFDVANSQGLKVGFYRKTCPNAEAIVKKVVDQAMSVAPSLSGPLLRMHFHDCFVRGCEGSVLLNSSTQQAEKDAFPNLSLRGYQVIDRVKSALEKACPGVVSCSDILALVARDVVVAMKGPSWKVETGRRDGRVSNITEALTNLIPPTANITQLKSGFQQRGLSVKDLVVLSGGHTLGTSHCSSFSSRLYNFTGKGDTDPDLDPKYIAKLKNKCKQGDANSLKRAFCV* 248
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 155482 156963 - Vvi10g10 Vvi10g10 770609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g10 247 Pfam Peroxidase 45 239 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi10g10 247 PRINTS Haem peroxidase superfamily signature 60 74 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi10g10 247 PRINTS Haem peroxidase superfamily signature 120 137 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi10g10 247 PRINTS Haem peroxidase superfamily signature 138 150 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi10g10 247 PRINTS Haem peroxidase superfamily signature 186 201 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi10g10 247 PANTHER PEROXIDASE 25-RELATED 9 235 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi10g10 247 ProSitePatterns Peroxidases proximal heme-ligand signature. 186 196 IPR019793 -
Vvi10g10 247 Gene3D - 33 163 - -
Vvi10g10 247 Gene3D Peroxidase, domain 2 164 239 - -
Vvi10g10 247 ProSitePatterns Peroxidases active site signature. 60 71 IPR019794 GO:0004601
Vvi10g10 247 PRINTS Plant peroxidase signature 38 57 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi10g10 247 PRINTS Plant peroxidase signature 62 82 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi10g10 247 PRINTS Plant peroxidase signature 100 113 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi10g10 247 PRINTS Plant peroxidase signature 119 129 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi10g10 247 PRINTS Plant peroxidase signature 138 153 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi10g10 247 PRINTS Plant peroxidase signature 185 197 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi10g10 247 SUPERFAMILY Heme-dependent peroxidases 28 240 IPR010255 GO:0004601|GO:0006979|GO:0020037
Vvi10g10 247 ProSiteProfiles Plant heme peroxidase family profile. 28 241 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi10g10 247 CDD secretory_peroxidase 28 240 IPR033905 GO:0004601|GO:0042744
Vvi10g10 247 PANTHER PEROXIDASE 9 235 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi10g10 Vvi12g530 ECH
Vvi10g10 Vvi12g433 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g10 K00430 - vvi:100262330 465.692