Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g102 ATGGTTGATTGTGGCGTTTTCAGGTCTGGTTTTCCCGATATTGCCAATTTCACCTTCTTGCAGACGCTTGGCCTTCGTTCGATCATATATCTCTGCCCTGAGCCTTATCCTGAACCGAACATCGAGTTTCTCAAATGTAATGGAATTCGGCTCTTCCAGTTTGGGATCGATGGATGTAAGGAGCCTTTCGTAAACATCCCAGAGGACACAATTCGTGAAGCATTGAAAGTGGTCCTTGATAAAAGAAATCACCCACTCCTCATTCATTGCAAACGAGGGAAGCACCGCACTGGTTGCCTTGTGGGATGCTTAAGAAAGCTGCAACGATGGTGCCTGTCTTCAATTTTTGATGAGTACCAGAGGTTTGCTGCCGCCAAAGCTAGAATATCAGACCAGAGGTTTATGGAATTGTTTGATATTTCCAGCTTCAAGCACTTGCCAATGACATCTCCACCTTCTAGAAGGTGCCAAAGCTAA 477 45.28 MVDCGVFRSGFPDIANFTFLQTLGLRSIIYLCPEPYPEPNIEFLKCNGIRLFQFGIDGCKEPFVNIPEDTIREALKVVLDKRNHPLLIHCKRGKHRTGCLVGCLRKLQRWCLSSIFDEYQRFAAAKARISDQRFMELFDISSFKHLPMTSPPSRRCQS* 159
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1185581 1187952 - Vvi10g102 Vvi10g102 770701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g102 158 Pfam Tyrosine phosphatase family 2 145 IPR004861 -
Vvi10g102 158 PANTHER TYROSINE-PROTEIN PHOSPHATASE 1 155 - -
Vvi10g102 158 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 2 140 IPR029021 -
Vvi10g102 158 CDD PFA-DSP_Siw14 1 139 - -
Vvi10g102 158 Gene3D Protein tyrosine phosphatase superfamily 1 142 IPR029021 -
Vvi10g102 158 ProSiteProfiles Dual specificity protein phosphatase domain profile. 1 149 IPR020422 GO:0006470|GO:0008138
Vvi10g102 158 PANTHER - 1 155 - -
Vvi10g102 158 ProSitePatterns Tyrosine specific protein phosphatases active site. 88 98 IPR016130 GO:0016311|GO:0016791
Vvi10g102 158 PRINTS Plant and fungal dual specificity phosphatase signature 30 43 IPR020428 GO:0016791
Vvi10g102 158 PRINTS Plant and fungal dual specificity phosphatase signature 49 63 IPR020428 GO:0016791
Vvi10g102 158 PRINTS Plant and fungal dual specificity phosphatase signature 66 80 IPR020428 GO:0016791
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g102 K18045 - vvi:100256357 334.724