Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi10g141 | ATGAAGACGCCGTTTCAATTGCAGACCCTGGAAAGGGCGTATGCTTTGGAACCGTATCCGACGGAGGCGTCGCGAGCAGAGCTGTCGGAGAAATTAGGGTTGTCAGACAGGCAATTACAGATGTGGTTTTGTCACCGGAGGTTGAAGGATAAGAAAGAGGGACAGGCAAAGGAGGCGGCGTCAAAGAAGCCAAGGAATGCCGTGGCTGAGGAGTTTGAGGATGAGGCACGAAGCGAACACGGGTCGCATTCTGGGTCTGGGTCCCTGTCGGGGTCCAGCCCGTTGGGTTATGGGCAGTTGCCACAGGTGCTCTCTGGAAATATGGGGCCAATGGGGCGAAGGTCTTATGAGTCACCCCAATCGATATTTGAGCTGAGAGTGATTGCTTCTGTGGAGGCCCAGTTGGGCGAGCCGTTGAGGGATGATGGTCCAATTCTCGGCATGGAGTTTGATCCATTACCCCCTGATGCGTTTGGGGCTCCTATTGCAATTGTGGAGCACCAAAAGCAATCAGCATACTGTTACGAGGAGAAAGTATACGAGCATCGTGATGCCAAATCAAAAAAAGCTGCTGCAAGAGCTTTTCATGATCATCCATTTCATCAAGATAAGTCCAGTACTAGACCTGATGCATATGGGCGTGTTGGTCCATCTCACTTCTATGATCGGCCTATTGATGGTCCAAGTTCTGAAACTTCGGCTTTTCTTCATAGAACTGAACCATCTTCTAGAGAATATGGTGAGCAGGGTTATGTATCTCATGCTCGTGTTCTGTCTCAACAAGACAAACAAGAACGCATTCTTTCATCTCCTGGGGATTATGACTCTGTGCCACGGTCTGATTCCTTCATGAATAGTGGAAAAGATGCTCAGTTTAGTGGTCATTCTATAGGACCCGAAAATTCATATGTATTATCTGACAGGCAAATAACGCATAACGGTGATGTTTTGAGGATGGATAGGAAACGAAAGGGTGAAGAAGCTAGAATCACAACTGATGCTGAAGCCCATGAGAAAAGGATCCGGAAAGAGCTTGAGAAACAAGATATTTTGAGGCGAAAGAGAGAAGAGCAAATAAGGAAAGAAATGGAAAGGCATGACCGTGAAAGACGGAAGGAAGAAGAGAGGTTGATGCGTGAAAGGCAGCGGGAGGTTGAGAGGTTGCAGCGCGAACAGAGACGTGAAATTGAACGAAGGGAAAAATTTTTGCAAAAAGAATCTCTTAGAGCTGAGAAAAGGAGGCAAAAGGAGGAGCTTCGCAGGGAAAAGGAGGCAGTGAGACTCAAAGCTTCAATTGAAAAGGCAACTGCACGTAGAATTGCTAGAGAATCCATGGAACTTATTGAAGATGACCGTTTGGAACTGATGGAATTGGCTGCCGCAAGCAAAGGGCTGCCCTCAATTGTTTCTCTTGACCATGACACTTTGCAAAACCTCGAGTCATTCAGAGATCTTTTGAGTGTGTTCCCACCCACGTCAGTGCAATTAAGAAGGCCGTTTGCAGTTCAACCTTGGGATGATTCAGAGGAGAATATTGGGAACCTTCTCATGGTCTGGAGATTTTTAATCACTTTTGCCGATGTGCTTCAGTTATGGCCTTTTACTCTTGATGAGTTTGTCCAAGCTTTTCATGACTATGATTCAAGATTGATGGGTGAGATACATATTGCTCTTGTAAAGTTGATAATAAAAGATATTGAAGATGTTGCTAGGACACCATCTCTTGGATTAGGAACAAATCAAAATACTGCTGCTGGTCCAGAAGGTGGCCATCCACACATTGTTGAAGGGGCATATGCATGGGGTTTTGATATCCGGAACTGGCAAAGACACTTGAATCCCTTGACATGGCCTGAAATATTGCGGCAATTTGCGCTCTCTGCAGGATTTGGGCCACAGTTGAAGAAGAGGAGTAGCGAATGGTCATATTCGCGTGAGAACAATGAGATTAAAGGTTGTGAAGATATAGTTTCTACCTTACGCAATGGTTCGGCAGCTGTCAATGCAGTTGCAATCATGAAAGGAAAAGGTTTTTCCCTCTCACGCCGATCCAGGCATCGGTTGACACCTGGAACAGTCAAATTTGCTGTTTTTCATGTTCTTTCACTTGAGGGTAGCAAGGGGCTAACAATATTAGAACTTGCAGACAAGATTCAGAAATCTGGACTTCGAGACTTGACAAGAAGCAAGGCGCCTGAGGCATCCATATCTGCTGCTCTATCACGGGATGCAGCCCTATTTGAAAGAACAGCTCCATGTACATATTGTGTACGACCAACTTTTAGAAAGGATCCCGCTGATGCTGAGAAAGTACTTTCAGCTGCTAGGGAGAAAGTTCATGTATTTGAAAATGGGTTTTTAGCTGGAGAAGATGTTGATGATGTTGAAAGAGATGACGATTCTGAATGTGATGTTGCAGAGGGTCCTGAAGTTGATGATTTAGGCACTCCATCAAATGCAAACAAAAACACCATCCATCTTAATAATGGGGGAAGCACTTGTTCAGGAAATGGCAAAGAGAATGCTTGTAATGATGTAATAAATCCACAAAATGAAGTTGTCAAGGATTTTTCTTCACCCCTTTCAAGTGGCACGAAGGTTACAACCACTGCAAGTATTACACTTAATCAATATGGTGCAGGCAATCCTGATCAAGAAAACGTAGAGATTGATGAAAGCAACTCAGGTGAACCATGGGTTCAAGGACTTGCAGAAGGGGAATACTCTGATCTCAGTGTTGAGGAGCGTCTTAATGCCCTGGTTGCCTTAATTGGTGTTGCAAATGAGGGAAACACTATTCGTGCTGTTCTTGAGGACCGCTTGGAAGCTGCAATAGCCCTTAAAAAGCAAATGTGGGCGGAGGCACAACTGGATAAAAAACGATTGAAAGAAGAGAATATAACTAAAGTACAGTATACATCTTGTATAGCGAGCAAGGCTGATATGAAACCTACTAGTGCTGCAGCAGAGGGCAGCCAGAGCCCATTGCCTGTTGATAATAAAAATAATGAGGCATCTCTTAACACTGCAGTAGGCCAAAAACCTTCTGTCAGTTCACACAATGTTCAGAATCACCTTAGTACATTGCCTACTGAAGGAACCTCAATAGTTCAAGAGTCGACAGTTCCGAATAACTTCATATCTCAACATGGATATGATGCAGAAAGATCACGCTTGCAATTAAAATCTTATATTGCCCACAGAGCAGAAGATGTTTATGTCTACAGGTCATTGCCTCTTGGTCAAGATCGTAGACGTAACAGATACTGGCAGTTTGTTGCATCTGCTTCCAGAAATGACCCTGGTTCCGGCAGGATTTTTGTTGAATTACATGATGGCTATTGGAGGCTTATTAATTCTGAAGAGGCCTTCGATGCTCTTATCACATCTTTGGATACACGAGGGATTAGGGAATCTCACTTGCACGCAATGCTGCAAAAAATTGAGATGGCTTTCAAGGAAAATGTTAGAAGAAATTCTCATACAGTTTGTGGTTTAGTATCTGATGCATTGGAGCCTTTATCATCTTTTGGGATTGAACTCGGGAGAAATGAGATGGAGAAAAGGGCTACATTGAAGAGATATCAAGATTTTCAAAAGTGGATGTGGAAAGAATGCTTTAATTCAGAAGCATTATGCTCTATGAAATATGGGAAGAAAAGATGCGCCCAGTTGTTGAGCATTTGTGATTTCTGTTTTGAGTGTTATTTTAATGAAGACAATCACTGTCCTTCTTGTCATAGGACGTTTGGATCCTTTGATAATAATGTACATTTTTTAGAACATGTTATCCAATGTGAAAACAAAAAGAAAACAAACCCTGAGGACTTACATATTTCAGATTCTTCTCTTCCCCTGGGAATCAGATTGCTAAAGGCTCTACTAGCTTTTATTGAGGTTTCTATTCCACTGGACGCTCTGGAGTCTTTTTGGATGGAAGGATATCAAAGAGAGACTTGGGGTATGAAGATACAGACCTCATCATCTATTGAGGATCTTCTACAGATTGTCACTTTGTTAGAGGGTGTCATAAAACAGGACCGTTTATCAACAGAGTTCAGGACAACAAAGGAATTGTTGGGCTCCTGTACTTCATCAGGGAATGCTGTATATGATTCTGCTTACACTGGGTCAGTTCCTGTACTTGCATGGATACCACAAACCACGGCAGCTGTGGCTGTCAGACTTTTGGAGCTTGATGCATCTATATCCTACATACATCATGATAAATCCCAATGTCATGATGATAAGAAGGAACTGGGAGAATTCAGAAAGTTTCCATCAAGGTATGCTCCAGTCAAGAATGCTCAAGAGGTTGAAATCAGTGGATTCCCCCAAGATATCCATAAGAAAGAAGAGAACTGGACTGACCTGGGTAATGGACGTGATAGCTCTAGGCATGGGCAAAGGGGTCGTGGGCGAGGGCGTGGTCGCTTACATGGTGAAAAATGGCAGAGAAGAGTTTCTAGTTCCAGACCGCACACTGGAAAGCATAATGCCAGGGACAATCCGAATTTAAATCAAAGACGAGGACTGCAGGACCGAAGAACTCGCGAACAGGAATCGCAAGGACAGGGTTGTAGGCGAGGACCCCGAACAGTTAGGAGAAGAGCAGATAAAAGGGCTGTCAAGGGGACTCCGCTTGGTCATTTGGGTGACATGGTTAGGCCTAAAGGCAAGGGTGAATCACATAGAAACTTGATCGGGGAGGGATGGGGCAAATTCACAATGATGCAAATGGATAATGCTGATAATCATAGCAGTGGGGATACTGTGGAATCTGACGATAATGCTCCAGAGATGGAACATGAGCATGGGAGCTGGGGGCTGGGTTTTGATGGTGTTTCAGGTGGTCAGACTGGGGATCTAATGGAAGTAAGTGATGAGGATGCAGAGGGTTCTGAAGATGATAATGGGAGTGAAGAGGAAGGTGATGATGACAATTCGGAAGATGCAAATATGAATGAGTGCTCAGATGGACTAGTAAATGGGGTTGGAAATGAAGATCTAGGCACAGAATATGCTACTTCAGAAGATTATAGTGATTGA | 5049 | 43.83 | MKTPFQLQTLERAYALEPYPTEASRAELSEKLGLSDRQLQMWFCHRRLKDKKEGQAKEAASKKPRNAVAEEFEDEARSEHGSHSGSGSLSGSSPLGYGQLPQVLSGNMGPMGRRSYESPQSIFELRVIASVEAQLGEPLRDDGPILGMEFDPLPPDAFGAPIAIVEHQKQSAYCYEEKVYEHRDAKSKKAAARAFHDHPFHQDKSSTRPDAYGRVGPSHFYDRPIDGPSSETSAFLHRTEPSSREYGEQGYVSHARVLSQQDKQERILSSPGDYDSVPRSDSFMNSGKDAQFSGHSIGPENSYVLSDRQITHNGDVLRMDRKRKGEEARITTDAEAHEKRIRKELEKQDILRRKREEQIRKEMERHDRERRKEEERLMRERQREVERLQREQRREIERREKFLQKESLRAEKRRQKEELRREKEAVRLKASIEKATARRIARESMELIEDDRLELMELAAASKGLPSIVSLDHDTLQNLESFRDLLSVFPPTSVQLRRPFAVQPWDDSEENIGNLLMVWRFLITFADVLQLWPFTLDEFVQAFHDYDSRLMGEIHIALVKLIIKDIEDVARTPSLGLGTNQNTAAGPEGGHPHIVEGAYAWGFDIRNWQRHLNPLTWPEILRQFALSAGFGPQLKKRSSEWSYSRENNEIKGCEDIVSTLRNGSAAVNAVAIMKGKGFSLSRRSRHRLTPGTVKFAVFHVLSLEGSKGLTILELADKIQKSGLRDLTRSKAPEASISAALSRDAALFERTAPCTYCVRPTFRKDPADAEKVLSAAREKVHVFENGFLAGEDVDDVERDDDSECDVAEGPEVDDLGTPSNANKNTIHLNNGGSTCSGNGKENACNDVINPQNEVVKDFSSPLSSGTKVTTTASITLNQYGAGNPDQENVEIDESNSGEPWVQGLAEGEYSDLSVEERLNALVALIGVANEGNTIRAVLEDRLEAAIALKKQMWAEAQLDKKRLKEENITKVQYTSCIASKADMKPTSAAAEGSQSPLPVDNKNNEASLNTAVGQKPSVSSHNVQNHLSTLPTEGTSIVQESTVPNNFISQHGYDAERSRLQLKSYIAHRAEDVYVYRSLPLGQDRRRNRYWQFVASASRNDPGSGRIFVELHDGYWRLINSEEAFDALITSLDTRGIRESHLHAMLQKIEMAFKENVRRNSHTVCGLVSDALEPLSSFGIELGRNEMEKRATLKRYQDFQKWMWKECFNSEALCSMKYGKKRCAQLLSICDFCFECYFNEDNHCPSCHRTFGSFDNNVHFLEHVIQCENKKKTNPEDLHISDSSLPLGIRLLKALLAFIEVSIPLDALESFWMEGYQRETWGMKIQTSSSIEDLLQIVTLLEGVIKQDRLSTEFRTTKELLGSCTSSGNAVYDSAYTGSVPVLAWIPQTTAAVAVRLLELDASISYIHHDKSQCHDDKKELGEFRKFPSRYAPVKNAQEVEISGFPQDIHKKEENWTDLGNGRDSSRHGQRGRGRGRGRLHGEKWQRRVSSSRPHTGKHNARDNPNLNQRRGLQDRRTREQESQGQGCRRGPRTVRRRADKRAVKGTPLGHLGDMVRPKGKGESHRNLIGEGWGKFTMMQMDNADNHSSGDTVESDDNAPEMEHEHGSWGLGFDGVSGGQTGDLMEVSDEDAEGSEDDNGSEEEGDDDNSEDANMNECSDGLVNGVGNEDLGTEYATSEDYSD* | 1683 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 1562229 | 1582041 | - | Vvi10g141 | Vvi10g141 | 770740 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi10g141 | 1682 | Pfam | WSTF, HB1, Itc1p, MBD9 motif 1 | 894 | 938 | IPR028942 | - | |
Vvi10g141 | 1682 | Pfam | Homeodomain | 3 | 52 | IPR001356 | GO:0003677 | |
Vvi10g141 | 1682 | MobiDBLite | consensus disorder prediction | 1443 | 1564 | - | - | |
Vvi10g141 | 1682 | Pfam | HB1, ASXL, restriction endonuclease HTH domain | 691 | 758 | IPR007759 | GO:0006355 | |
Vvi10g141 | 1682 | MobiDBLite | consensus disorder prediction | 1444 | 1470 | - | - | |
Vvi10g141 | 1682 | MobiDBLite | consensus disorder prediction | 1582 | 1682 | - | - | |
Vvi10g141 | 1682 | Pfam | DDT domain | 510 | 565 | IPR018501 | - | |
Vvi10g141 | 1682 | ProSiteProfiles | DDT domain profile. | 509 | 568 | IPR018501 | - | |
Vvi10g141 | 1682 | ProSiteProfiles | 'Homeobox' domain profile. | 1 | 53 | IPR001356 | GO:0003677 | |
Vvi10g141 | 1682 | SMART | HOX_1 | 1 | 57 | IPR001356 | GO:0003677 | |
Vvi10g141 | 1682 | PANTHER | HOMEOBOX-DDT DOMAIN PROTEIN RLT2 | 1 | 1682 | IPR044977 | GO:0006357 | |
Vvi10g141 | 1682 | SUPERFAMILY | Homeodomain-like | 2 | 53 | IPR009057 | - | |
Vvi10g141 | 1682 | Gene3D | - | 1 | 69 | - | - | |
Vvi10g141 | 1682 | MobiDBLite | consensus disorder prediction | 1482 | 1499 | - | - | |
Vvi10g141 | 1682 | PANTHER | HOMEOBOX-DDT DOMAIN PROTEIN RLT1 | 1 | 1682 | - | - | |
Vvi10g141 | 1682 | ProSiteProfiles | HARE-type HTH domain profile. | 691 | 760 | IPR007759 | GO:0006355 | |
Vvi10g141 | 1682 | MobiDBLite | consensus disorder prediction | 1588 | 1607 | - | - | |
Vvi10g141 | 1682 | MobiDBLite | consensus disorder prediction | 82 | 100 | - | - | |
Vvi10g141 | 1682 | Coils | Coil | 334 | 354 | - | - | |
Vvi10g141 | 1682 | Coils | Coil | 356 | 429 | - | - | |
Vvi10g141 | 1682 | MobiDBLite | consensus disorder prediction | 50 | 81 | - | - | |
Vvi10g141 | 1682 | MobiDBLite | consensus disorder prediction | 50 | 115 | - | - | |
Vvi10g141 | 1682 | MobiDBLite | consensus disorder prediction | 363 | 384 | - | - | |
Vvi10g141 | 1682 | MobiDBLite | consensus disorder prediction | 1508 | 1525 | - | - | |
Vvi10g141 | 1682 | MobiDBLite | consensus disorder prediction | 1625 | 1653 | - | - | |
Vvi10g141 | 1682 | SMART | testlast3 | 509 | 568 | IPR018501 | - | |
Vvi10g141 | 1682 | Pfam | Williams-Beuren syndrome DDT (WSD), D-TOX E motif | 1076 | 1148 | IPR028941 | - | |
Vvi10g141 | 1682 | CDD | homeodomain | 2 | 53 | IPR001356 | GO:0003677 |
Event-related genes

Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
13648 | PF15613 | WSD | 2.20E-15 | No_clan | Vvi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi10g141 | - | - | vvi:100247033 | 3152.46 |