Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g142 ATGGAGTCGAGGGTGTTGTCCGGCGCCACCACCATTTCCGGCCTCGTCCGGCTCCGTAAACCGGTGAGGGACACCGTTTGCTTCGCTCCTGCCAGACCAATCGGGGCTGTGGGAGACGGCGGGAACCTCATATGGGGGAGGCAGCTCCGGCCAGCTTTGATCCTGGAGAGCGCTCCAGTCGTCGGCATGACCACCGGAAAGCGTGAGATTCTCCGGCCGACTATGGCCTCCACGTCGTCGCCCGCCGAAGGGAGCGATTCCGCCGGGGACGCTAAGATTGGGTTCTTGGACAAGTACCCGGCTCTAGTTACGGGGTTTTTCTTCTTCATGTGGTATTTCCTCAACGTTATATTCAACATCCTCAACAAGAAGATCTACAACTACTTCCCATATCCTTATTTTGTATCGGTAATTCATTTGTTTGTTGGGGTGGTCTACTGTTTGGTGAGCTGGGGCGTCGGCCTTCCCAAGCGAGCTCCTATAGACTCAAACCTCCTGAAACTGCTCATCCCCGTTGCTGTATGTCATGCTCTAGGCCATGTGACTAGCAATGTCTCCTTTGCAGCAGTTGCCGTCTCTTTCACCCACACAATCAAAGCTCTTGAACCCTTCTTCAATGCTGCGGCTTCTCAATTTATACTAGGACAGTCGATACCCTTAACCCTATGGCTATCTCTGGCCCCTGTTGTTCTTGGTGTGTCAATGGCATCATTGACTGAGCTATCATTCAACTGGATTGGCTTCATTAGTGCTATGATTTCTAATATCTCCTTCACTTACAGGAGTATCTATTCAAAGAAGGCCATGACTGACATGGACAGTACTAATATCTATGCTTATATTTCCATCATTGCTCTCATTGTCTGCATTCCACCGGCTCTCATTGTGGAGGGACCTCAACTGATGAAGCATGGCTTTAATGATGCAATTGCTAAAGTGGGTCTGACCAAGTTCCTCTCAGATCTCTTTTGGGTGGGAATGTTTTATCACCTCTACAATCAGCTAGCTACCAACACCCTGGAGAGAGTGGCACCTCTCACACATGCAGTTGGCAACGTCTTGAAACGTGTTTTTGTGATTGGTTTCTCGATCTTGGTCTTTGGTAACAAGATTTCAACACAAACTGGTATTGGAACATGCGTTGCAATTGCTGGAGTGGCAATGTACTCTTTCATAAAGGCCAAGATGGAAGAGGAGAAACGACAACTGAAATCAGCATGA 1221 48.89 MESRVLSGATTISGLVRLRKPVRDTVCFAPARPIGAVGDGGNLIWGRQLRPALILESAPVVGMTTGKREILRPTMASTSSPAEGSDSAGDAKIGFLDKYPALVTGFFFFMWYFLNVIFNILNKKIYNYFPYPYFVSVIHLFVGVVYCLVSWGVGLPKRAPIDSNLLKLLIPVAVCHALGHVTSNVSFAAVAVSFTHTIKALEPFFNAAASQFILGQSIPLTLWLSLAPVVLGVSMASLTELSFNWIGFISAMISNISFTYRSIYSKKAMTDMDSTNIYAYISIIALIVCIPPALIVEGPQLMKHGFNDAIAKVGLTKFLSDLFWVGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSILVFGNKISTQTGIGTCVAIAGVAMYSFIKAKMEEEKRQLKSA* 407
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1588545 1593162 - Vvi10g142 Vvi10g142 770741
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g142 406 Pfam Triose-phosphate Transporter family 103 390 IPR004853 -
Vvi10g142 406 TIGRFAM tpt: Tpt phosphate/phosphoenolpyruvate translocator 102 400 IPR004696 GO:0016021|GO:0022857|GO:0055085
Vvi10g142 406 PANTHER BNAC02G47130D PROTEIN 27 398 - -
Vvi10g142 406 PANTHER SOLUTE CARRIER FAMILY 35 27 398 - -
Vvi10g142 406 SUPERFAMILY Multidrug resistance efflux transporter EmrE 319 391 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi10g142 Vvi19g471 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g142 K15283 - vvi:100257292 803.512