Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g153 ATGATCGATCTCAACACCGTCGACGACGACGAGACACCCTCGTCTGGGTCGTCGTCTTCCTCCTCCTCATCCGCCTCTGCTTCTGCTTCCACAGTTTGTGGTTCTTTGTTGTCGGCGGCGTCGTCGGTATGTTTGGAGCTGTGGCACGCGTGTGCTGGCCCGCTCATATCGCTTCCGAAGAAAGGCAGCCTTGTGGTGTACTTTCCACAGGGCCACCTGGAGCAGCTTTCTGATTATCCGGCCGTAGCCTATGATCTCCCGCCTCACGTCTTCTGTCGAGTGGTTGATGTCAAGCTCCATGCCGAGGTAGTTACGGATGAAGTTTACGCACAGGTCTCGCTGGTTCCTGAAACCAAGATTAAGCAGAAACTGCAGGAAGGGGAAATTGAAGCAGATGGTGGTGAAGAAGAGGATATTGAGGGTTCTATCAAGTCCATGACACCCCACATGTTCTGCAAAACTCTTACTGCTTCAGATACTAGCACCCATGGGGGTTTTTCTGTCCCCCGCCGAGCTGCAGAGGACTGTTTTCCTCCCCTGGATTACAAACAGCAGAGACCTTCACAAGAGCTTGTGGCCAAAGATTTGCATGGCTTCGAATGGAGATTCCGGCATATCTACAGGGGGCAGCCAAGGCGGCATTTGCTTACTACTGGTTGGAGTGCATTTGTAAACAAGAAGAAGCTTGTGTCTGGAGATGCTGTACTCTTTCTTAGGGGTGGGGATGGAGAACTAAGACTGGGAATCCGAAGAGCAGCTCAAATTAAAGGTTCGTCTCCTTTCCCAGCTCTTTGTAGCCAACAGTTGAATCTCAACACCCTTACAGCTGTGGTCAATGCTATATCCACAAGAAGTGTTTTCAACATATGCTACAATCCGAGGGCTAGCTCATCAGAGTTCATAATACCGCTCCGTAAATTCTCAAAGAGCATTGATCATTCATTTTCTGCTGGGATGAGGTTCAAAATGCGTGTTGAAACAGAAGATGCAGCAGAACGAAGATATACTGGACTGATAACTGGGATCAGTGACATGGATCCTGTTAGATGGCCTGGTTCTAAATGGAGGTGCCTATTGGTAAGGTGGGACGATATAGAGGCTAATCGACATAACAGGGTTTCTCCATGGGAAATTGAGCTATCTGGTTCGCTTTCTGGTTCTGGCAGCTTGACAGTTCCTGGCTCAAAGAGGACCAGGATTGGTTTGCCGGGAACTAGACCAGATTTTTCAGTTCCCAATGGGATGGGAGTGTCAGACTTTGGGGAATCTTCAAGGTTCCAGAAGGTCTTGCAAGGTCAAGAAATTTTTGGTTTTAACACTCCTTATGATGGTGTTGATACCCAGGATCATCATCCATCTGAAATAAGGTGTTTTCCTGGTTCAAGTTGTTCTGGGATTGCTGCAATAGGAAATGGTGTTAGAAACCCTCTTGGGAATTCTGATATTTCCTATAAAGGCATAGGCTTTGGTGAATCTTTTCGATTCCATAAGGTCTTGCAAGGTCAAGAAACATTTCCAAGCCCACCATGTGGAAGAGCTCTGTCTGCTAACCAGGCTCATGAAAATGGTAGCTTTGGAATCTTTGATGGTGTTCAAGTGCCGACTTCTAGAAATGGATGGCCTGCCCTTGTGCAGGGATATAATGCCCACACTCACCTGTCCACACCATCAGTGCAAGTGTCGTCACCATCATCGGTGTTAATGTTCCAGCAAGCAAGCACTGCTGCTCCTAACATTTACTCAATGCATAGCGCCAATAATCAGGAGAAGGAGCAAGAAATTAGTAACCGGAGTTCATTTGATATTCCTGAAGTGTATGGTGAAAAGCTCACACCATCACGTTGTGAGCTTAGTGTCAGGGGAGGAGTTCCTACATGTAAAAGTAGCTGCAGGCTCTTTGGCTTTTCCTTAACGGAGGAAAGAAGCATTGGAAATAAAGTGGACAACCCCACTCCTGTTACATCTTCATTGATTCCTGGAACCTCTTTTCTGCCCCAGCAGTTGCACTCAGAGCCTCCGGTGATGACCAAGGCAATTGGAAGCAATTGTACCAAAGTAAGTGACTTCTATGCTGTAAGGGATATGCTTTTTGATATTGCGCTGTAG 2106 47.2 MIDLNTVDDDETPSSGSSSSSSSSASASASTVCGSLLSAASSVCLELWHACAGPLISLPKKGSLVVYFPQGHLEQLSDYPAVAYDLPPHVFCRVVDVKLHAEVVTDEVYAQVSLVPETKIKQKLQEGEIEADGGEEEDIEGSIKSMTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYKQQRPSQELVAKDLHGFEWRFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFLRGGDGELRLGIRRAAQIKGSSPFPALCSQQLNLNTLTAVVNAISTRSVFNICYNPRASSSEFIIPLRKFSKSIDHSFSAGMRFKMRVETEDAAERRYTGLITGISDMDPVRWPGSKWRCLLVRWDDIEANRHNRVSPWEIELSGSLSGSGSLTVPGSKRTRIGLPGTRPDFSVPNGMGVSDFGESSRFQKVLQGQEIFGFNTPYDGVDTQDHHPSEIRCFPGSSCSGIAAIGNGVRNPLGNSDISYKGIGFGESFRFHKVLQGQETFPSPPCGRALSANQAHENGSFGIFDGVQVPTSRNGWPALVQGYNAHTHLSTPSVQVSSPSSVLMFQQASTAAPNIYSMHSANNQEKEQEISNRSSFDIPEVYGEKLTPSRCELSVRGGVPTCKSSCRLFGFSLTEERSIGNKVDNPTPVTSSLIPGTSFLPQQLHSEPPVMTKAIGSNCTKVSDFYAVRDMLFDIAL* 702
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1695977 1704736 - Vvi10g153 Vvi10g153 770752
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g153 701 MobiDBLite consensus disorder prediction 1 25 - -
Vvi10g153 701 Pfam B3 DNA binding domain 151 252 IPR003340 GO:0003677
Vvi10g153 701 PANTHER AUXIN RESPONSE FACTOR 3 34 700 - -
Vvi10g153 701 Pfam Auxin response factor 278 358 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vvi10g153 701 Gene3D - 149 253 IPR015300 -
Vvi10g153 701 MobiDBLite consensus disorder prediction 389 413 - -
Vvi10g153 701 CDD B3_DNA 149 251 IPR003340 GO:0003677
Vvi10g153 701 MobiDBLite consensus disorder prediction 8 25 - -
Vvi10g153 701 Gene3D - 314 388 - -
Vvi10g153 701 SUPERFAMILY DNA-binding pseudobarrel domain 146 259 IPR015300 -
Vvi10g153 701 SMART B3_2 151 253 IPR003340 GO:0003677
Vvi10g153 701 ProSiteProfiles B3 DNA-binding domain profile. 151 253 IPR003340 GO:0003677
Vvi10g153 701 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 34 700 IPR044835 GO:0003677|GO:0006355|GO:0009725
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13650 PF02362 B3 4.80E-22 CL0405 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g153 K14486 - vvi:100245251 1340.48