Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g17 ATGGAAGTTGCAAACTTGCAACTTGCGTGCGGGCTTTTCCGATCACTTGTTTCTCTAACATTTGTTTTCTTCCTTCCCGATATGGAGTCCGCTGAGGATTTCGTGGAGAAAGATCCGTCTGGTCGATACGTTCGCTATAACGAGTTCTTGGGAAAGGGGGCATTCAAGACTGTGTATAAGGGTTTTGACGAGGACGATGGAACGGAGGTTGCGTGGTGCCAGGTTGACATCGACGACGTGTTGCAGTCGCCCGAGGAGGTTCAGCGATCCTTGTATTCGGAGGTAAATTTGATCAAGTCTTTGAAGCATGAAAACATAATTAAGTGTTATAATTCGTGGGTTAATGACGAGAAGAAGACGATAAACATCATAACTGAGTTGTTCACTTCTGGGATTAAAATTGGGGATTTGGGATTAGCTATCGTTATGCAGCAGCCTTTTGCCCGGAGTTGCATCGGGACGCCGGAATTCATGGCTCCCGAGCTTTACGACGAGGAGTATAATGAGCTTGTTGACATATACTCATTTGGCATGTGTGTTTTGGAGATGGTTACTGGTGAATATCCATATAGTGAGTGCACAAACCCGGCGCAAATATTTAAGAAGGTCACCTCTGGTGTGAAGCCCGCTGCTCTTAGCAGAGTGGGTGATCCTCAGGTTAAGCAGTTTATTGAGAAGTGCCTGGTTCCAGCATCTTTGAGATTGTCTGCAGAGGAGCTCTTGAAAGACCCATTCCTGGCTTCTGAAAATTCGAAGGATCGTGTTTGCAATACCCTGCTGTTATCCAATTTTATGCCCAAAGTCATGAGTTCGCCAAAGCCTCAATCTTGTGTTAGTACGAACAATTTGGCTTCTGAAAGTTCCGAGGAGCTTGTTTGCAATCCCCTGCAGTTATCCCATCTTGTACCCAAATCCATGAACTCAGCAAAGCTTCAACTCCTTACTCTACAGATGGACCCCGACTGGCAGAAGCTTTTGGTTGGCATGAGGAATAGAAGTTTGTCAATCATCTCTTCCTTTGCCCTTGCAAAAAAAGGTCTTAAGCTGGATCTTGATGCAGTACACATGCAAAACCAGCAATGCCTTAGCCAACTCTTGAGGCAGAGGGAGGAAGTAGCAGAAGATGCAAAAGGGAGGTGGATCATAAAGAAGATACCTATGTTTTATCGTTTATATGGATGTCGTTATCGCGCGTGTGTATTCACGGGTAACTTGACAATTTCCAAACATCAAACACACTCAAACTTAGAATATTACACTAATTTTTCTTCTCACTCTGGCCCATGA 1287 44.6 MEVANLQLACGLFRSLVSLTFVFFLPDMESAEDFVEKDPSGRYVRYNEFLGKGAFKTVYKGFDEDDGTEVAWCQVDIDDVLQSPEEVQRSLYSEVNLIKSLKHENIIKCYNSWVNDEKKTINIITELFTSGIKIGDLGLAIVMQQPFARSCIGTPEFMAPELYDEEYNELVDIYSFGMCVLEMVTGEYPYSECTNPAQIFKKVTSGVKPAALSRVGDPQVKQFIEKCLVPASLRLSAEELLKDPFLASENSKDRVCNTLLLSNFMPKVMSSPKPQSCVSTNNLASESSEELVCNPLQLSHLVPKSMNSAKLQLLTLQMDPDWQKLLVGMRNRSLSIISSFALAKKGLKLDLDAVHMQNQQCLSQLLRQREEVAEDAKGRWIIKKIPMFYRLYGCRYRACVFTGNLTISKHQTHSNLEYYTNFSSHSGP* 429
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 222773 228777 + Vvi10g17 Vvi10g17 770616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g17 428 ProSiteProfiles Protein kinase domain profile. 1 246 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g17 428 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 30 131 - -
Vvi10g17 428 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 132 268 - -
Vvi10g17 428 Pfam Protein kinase domain 119 246 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g17 428 PANTHER WNK KINASE 132 268 - -
Vvi10g17 428 PANTHER WNK KINASE 30 131 - -
Vvi10g17 428 SUPERFAMILY Protein kinase-like (PK-like) 47 290 IPR011009 -
Vvi10g17 428 Gene3D Phosphorylase Kinase; domain 1 27 126 - -
Vvi10g17 428 Gene3D Transferase(Phosphotransferase) domain 1 129 269 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75967 PF00069 Pkinase 2.30E-17 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g17 K08867 - vvi:100250308 644.039