Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g183 ATGGGTTCTGGAGATTGGTTTAAGGCAATACTTAGCTCAAAGAAAGTGAAAGGTGACAATTCAAGAAAAACGAAGGGAACTTCAACTGATGCAAAATCAAATGGTTTCAAATGGAGGAGCCGCACTCTGAAAGGGTCTACTGGTTTTTCCTATGGTTCTACTAGTGGAAATCCTGGGGTTCTTGGTATTCCAGTTGAGGATATAGCTGCAACTCGGATTCAGACTGCATTCCGGGCATTTATGGCTAGGAAAACTTTACGACGTTTAAAAGGGATAGTAAGGTTACAGAAACTGACCCAGGGCGATTGTGTTAGAAAGCAAGCTTCGACTACATTGAGCTATCTTAGCTCATGGAGCAGGATACAGACCCAGATTAGAGCTCGCCGACTCTGTATGGTTACAGAAGGCCGGATTAGACAGAAGAAATTAGAGAATCAATTAAAACTTGACGCAAAGCTTCATGATCTGGAGGTGGAATGGTGTGGAGGTCCTGAAACAATGGAGGAAATTCTTGCAAGGATATATCACAGGGAAGAAGCAGCAGTAAAGCGGGAGCGAGCACTGGCATATGCCTTCTCTCATCAGTGGAGGGCTAACTCTGGTCAGAACCAAGGGCCAAATAAATCTGGACTTAGCAAAGCTAATTGGGGTTGGAGCTGGATGGAACGTTGGATTGCAGCTCGCCCATGGGAAAGCCGAGTCCACATAAGCCCAAAGAAAGCACAGAGTAGGCAGAAAAACAAGGTTGGTAAAAACATAATCTCACCAACAACAAAAGTACCAGTTACAGTTAATCCTAATGGGAAAGGAACCACAAAGGCCAGAAGATTATCCTACCCATCTGCTGAAAAACCTGCTGCACGAGATGGGAACATTAAACCTGAAGAAGTAAATGCTAAAGAAGAACAGCCAGGACCTTAG 921 44.3 MGSGDWFKAILSSKKVKGDNSRKTKGTSTDAKSNGFKWRSRTLKGSTGFSYGSTSGNPGVLGIPVEDIAATRIQTAFRAFMARKTLRRLKGIVRLQKLTQGDCVRKQASTTLSYLSSWSRIQTQIRARRLCMVTEGRIRQKKLENQLKLDAKLHDLEVEWCGGPETMEEILARIYHREEAAVKRERALAYAFSHQWRANSGQNQGPNKSGLSKANWGWSWMERWIAARPWESRVHISPKKAQSRQKNKVGKNIISPTTKVPVTVNPNGKGTTKARRLSYPSAEKPAARDGNIKPEEVNAKEEQPGP* 307
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2105011 2111101 + Vvi10g183 Vvi10g183 770782

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g183 306 MobiDBLite consensus disorder prediction 17 36 - -
Vvi10g183 306 MobiDBLite consensus disorder prediction 288 306 - -
Vvi10g183 306 MobiDBLite consensus disorder prediction 258 306 - -
Vvi10g183 306 MobiDBLite consensus disorder prediction 258 274 - -
Vvi10g183 306 PANTHER IQ-DOMAIN 9 1 287 - -
Vvi10g183 306 ProSiteProfiles IQ motif profile. 66 94 IPR000048 GO:0005515
Vvi10g183 306 PANTHER IQ-DOMAIN 5-RELATED 1 287 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g183 - - - vvi:100258909 615.92
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi10g183 Vvi19g140 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi10g183 . . Bda02g00019 . . Bpe01g00879 . . . . . Cma07g00203 . Car07g00168 . . . Bhi03g00330 . . . . . . Cla01g02298 Cam01g2409 Cec04g2056 . Clacu01g2430 Cmu01g2294 Cre04g1962 Cone1ag0191 Cone5ag1677 . . Lsi01g00265 Csa06g03677 . Cme08g00247 . . . . . . . Bma11g01010 . . Cmo07g00202 . . . . Cpe19g01052 . . . . . . . . . . . . . . . . . Chy02g00253 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vvi13g474 ECH 107 328 IQD Protein Family AT3G09710 56.4 1.8e-59 227.3
Vvi8g606 ECH 1 289 IQD Protein Family AT5G03040 56.6 1.1e-72 271.2
Vvi13g474 ECH 1 299 IQD Protein Family AT5G03040 53.0 2.1e-68 256.9
Vvi13g474 ECH 1 309 IQD Protein Family AT3G52290 59.5 1.5e-79 293.9
Vvi8g606 ECH 6 289 IQD Protein Family AT3G52290 56.4 3.7e-75 279.3
Vvi13g474 ECH 96 310 IQD Protein Family AT2G26410 54.6 1.6e-48 191.0
Vvi6g808 . 1 418 IQD Protein Family AT3G22190 60.9 8.6e-109 391.0
Vvi4g85 . 1 390 IQD Protein Family AT2G26180 60.9 5.5e-116 414.8
Vvi19g140 ECH 1 243 IQD Protein Family AT3G15050 53.5 7.0e-61 231.1
Vvi10g183 ECH 67 264 IQD Protein Family AT3G15050 56.7 3.4e-55 212.2
Vvi15g624 ECH 1 558 IQD Protein Family AT4G00820 55.5 4.2e-129 458.8
Vvi15g624 ECH 1 558 IQD Protein Family AT1G01110 51.0 1.2e-120 430.6
Vvi9g268 ECH 1 373 IQD Protein Family AT3G16490 57.3 5.0e-79 292.0
Vvi11g260 ECH 1 395 IQD Protein Family AT3G16490 51.0 2.1e-69 260.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007113 1 8 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 0 1 0 2 1 2 37