Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g184 ATGTTGCATGAGAAAACAAAAGATATATGGAAAAGCAAACGCTCTTACTTGATGTCTTCTTCTGCATCATTAGTATCTGAGCAACTGATGATCGAAGGCACAAGAATCAGTTTGGAGCACGCATCATCGGAGCTGAGGCTGAAGAAGGGAGCAGAAAGAGTGCAAGTCCGACGAGGTCACATTGCGCGTTCCATCGGAAAGAAAGATCGTCACAGCAAGGTTTGTACTTCAAAGGGTCCAAGAGACCGCCGGGTGCGATTGTCTGCTAACACTGCTATTCAATTCTACGATGTCCAGGACCGACTCGGCTACGACAGACCCAGTAAGGCGGTTGATTGGCTCATGGAGAAGGCGAAAACGGCCATTGATGCTCTTGCTGAGTTGCCTACACAATGTCCTTTATCTACTTCTGTTGTTGCATCAGCCCAACAGAGAGAGCAGAATCTAAATCATCTACAGCATCCCCACTTACGCGTTGAGCAGTTGGAAACTATCTTGGATTTGAATCAGCAGCATTTGAATGAGAATCCCATTTACAGTTCGGGCTTCTTTCACATTCCTGTTTCCACAGCATTTTCTGCAGTTCATTTCCAGAACAGCCCAGCTTATCCGAATTTAGGAGCAATAAGCCACACCCAATATCCTTACCTGTCTATTCAGAGCTTCCAAGACCCAACACCTGGACGTCATCATTCTACTACTATTTCTTCAGCGGATCAAGCTATCTACTCTGCCTCGTCTCCACTAGTTTTTGATGCCGCATCTACCCACTGGCCTCATAGTGATCCACCTGAGATGAGTCAGCCCCAGAAAATGATTGATTGGAATTCTGACACAGGCAATGGAATTCAAGGGCTTGTCTTTGATTCGTTGCCACTTCCACTACAAGAACCAGTTCTTAGCCAAAACCAGTTGTTTTCCGAGAGGGAACCCCTTCAGTCCACTGATTCAGCTTTAATTTCCGATTGGATGAATCCACCTATTTCCACCGCCAATGTTCAACATATCACAATGGAAGCCAATCAATCATCTGGCTTTGCATTGGCCTCAAACGGAATTTCGAGGATTGGCATTTCTGCACATATTCAAGGTGAAGATATGGAGCAGAGCACGGTGTGCAACAGCCAGTCCTCTGCTACTCACTGCTGA 1149 46.04 MLHEKTKDIWKSKRSYLMSSSASLVSEQLMIEGTRISLEHASSELRLKKGAERVQVRRGHIARSIGKKDRHSKVCTSKGPRDRRVRLSANTAIQFYDVQDRLGYDRPSKAVDWLMEKAKTAIDALAELPTQCPLSTSVVASAQQREQNLNHLQHPHLRVEQLETILDLNQQHLNENPIYSSGFFHIPVSTAFSAVHFQNSPAYPNLGAISHTQYPYLSIQSFQDPTPGRHHSTTISSADQAIYSASSPLVFDAASTHWPHSDPPEMSQPQKMIDWNSDTGNGIQGLVFDSLPLPLQEPVLSQNQLFSEREPLQSTDSALISDWMNPPISTANVQHITMEANQSSGFALASNGISRIGISAHIQGEDMEQSTVCNSQSSATHC* 383
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2112285 2113434 - Vvi10g184 Vvi10g184 770783
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g184 382 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 191 380 IPR005333 GO:0003700
Vvi10g184 382 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 39 161 IPR005333 GO:0003700
Vvi10g184 382 PANTHER TRANSCRIPTION FACTOR TCP4 39 161 - -
Vvi10g184 382 PANTHER TRANSCRIPTION FACTOR TCP4 191 380 - -
Vvi10g184 382 ProSiteProfiles TCP domain profile. 67 125 IPR017887 -
Vvi10g184 382 Pfam TCP family transcription factor 66 154 IPR017887 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi10g184 Vvi12g203 ECH
Vvi10g184 Vvi19g139 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13655 PF03634 TCP 1.50E-31 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g184 - - vvi:104880485 691.419