Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g214 ATGTATAATTTTGTGTTATGTTTATGTGTGTTTGTGGTTTTGGGCGCTTTTGTTGTCCATGCCGCCCAGGATGCGCCAGGAATCAAGCTGTTTGGGGCAACGATTGCGTTGCATGGGGGAGAGGTAAAGGAGGAAGCGAATAACAAAGGTGATCACAAGGAAGAAAAGAGGCCTGAAAAGATCATACCATGCCCAAGATGCAAGAGCATGGAGACCAAATTTTGTTACTTCAATAATTATAATGTTAACCAGCCTCGTCACTTCTGCAAGGGTTGCCAGAGGTACTGGACCGCCGGTGGAGCCCTGAGGAACGTGCCCGTCGGAGCTGGTCGCCGGAAAAGTAAGCCGCCCTGTCGTGGTGTGGCCGGGTTCTTGGAGAGTTGCTTGTTTGATGCTTCAGCTGGGGTGCACCAGTTTGACCTCGAAGGCGTTGTGGTCGAGGAGTGGCACATGGGTGGTTTCCGGCATGCTTTCCCGGCTAAGAGGCGTAGGAGCAGCTCATCGGGAGGTCAAACTTGTTGA 522 51.72 MYNFVLCLCVFVVLGAFVVHAAQDAPGIKLFGATIALHGGEVKEEANNKGDHKEEKRPEKIIPCPRCKSMETKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRKSKPPCRGVAGFLESCLFDASAGVHQFDLEGVVVEEWHMGGFRHAFPAKRRRSSSSGGQTC* 174
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2577240 2577870 - Vvi10g214 Vvi10g214 770813
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g214 173 Pfam Dof domain, zinc finger 60 115 IPR003851 GO:0003677|GO:0006355
Vvi10g214 173 PANTHER CYCLIC DOF FACTOR 2 22 168 IPR045174 GO:0003700|GO:0006355
Vvi10g214 173 ProSiteProfiles Zinc finger Dof-type profile. 62 116 IPR003851 GO:0003677|GO:0006355
Vvi10g214 173 ProSitePatterns Zinc finger Dof-type signature. 64 100 IPR003851 GO:0003677|GO:0006355
Vvi10g214 173 PANTHER DOF ZINC FINGER PROTEIN DOF1.5-LIKE 22 168 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13656 PF02701 zf-Dof 5.50E-32 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g214 - - vvi:100244549 335.88