Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g220 ATGACTTGTGTCTATTTTATGGAATTGAGACTTTTTGTTGTAGTTATCTTGTTCCTGGGTGCTTGCATGAAACCTCCTCATTTATCAATGATCACTGAATACATGGAAATGGGTTCATTACATTATGTGATCCATGGAAGTGGGCAGAAAAGGATACTCAGCTGGAGAAGGAGGCTAAAAATGCTATGTGATATATGCAGGGGTTTGATGTGCATATATTGGATGGAGATGGTCCATCGCGATCTAAAGAGCGTTAATTGCCTTGTGGATAAGCACTTGACAATCAAGATTTGCGATTTTGGACTGTCATGGATACTTACCACTACACCAATGAGAGATATATCATCTGCAGGGACTCCAGAATGGATGGCTCAGGAACTCGTCTGA 387 40.83 MTCVYFMELRLFVVVILFLGACMKPPHLSMITEYMEMGSLHYVIHGSGQKRILSWRRRLKMLCDICRGLMCIYWMEMVHRDLKSVNCLVDKHLTIKICDFGLSWILTTTPMRDISSAGTPEWMAQELV* 129
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2677201 2706936 + Vvi10g220 Vvi10g220 770819
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g220 128 Pfam Protein tyrosine and serine/threonine kinase 15 127 IPR001245 GO:0004672|GO:0006468
Vvi10g220 128 PANTHER SERINE/THREONINE-PROTEIN KINASE EDR1-LIKE 13 127 - -
Vvi10g220 128 ProSitePatterns Serine/Threonine protein kinases active-site signature. 77 89 IPR008271 GO:0004672|GO:0006468
Vvi10g220 128 ProSiteProfiles Protein kinase domain profile. 1 128 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g220 128 PANTHER SERINE-THREONINE PROTEIN KINASE 13 127 - -
Vvi10g220 128 SUPERFAMILY Protein kinase-like (PK-like) 15 127 IPR011009 -
Vvi10g220 128 Gene3D Transferase(Phosphotransferase) domain 1 7 128 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi10g220 Vvi12g164 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75968 PF07714 PK_Tyr_Ser-Thr 1.70E-23 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g220 - - ini:109156055 198.749