Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g228 ATGGAGAAGAAAGGTGTAATTTTGATGCAAAGGTACGAGATGGGGAGAATGCTTGGGCAAGGGACTTTTGCCAAGGTTTACCATGCTCGGAACCTCAAGTCCGGTCAGAGCAAACTCAAGGAAGACGCGGCTCGCAAGTATTTCCAGCAATTGATTGGAGCTGTTGACTTCTGCCATAGCCGAGGAGTCTACCACCGCGACCTCAAGCCGGAGAATCTCCTCCTTGACGAGAATGGAGACCTTAAAGTAACCGATTTTGGCTTGAGTGCGCTGTGGGACTCAAGGAGGCATGATGGCCTCCTCCACACTACTTGTGGAACTCCAGCTTATGTGGCTCCGGAGGTCATCAACAAGAAGGGCTATGATGGAGCCAAGGCAGACATGTGGTCATGTGGCGTCATTCTCTTCGTTCTCATGGCTGGTTTTCTCCCTTTCCATGACCCTAATCTCATGGAAATGTACAGGAAGATCAGCAGAGGTGAATTCAAGTGCCCACAATGGTTCCCACTGGAGGTCCGGAAGCTTCTTTCTAAAATTCTCGACCCCAGCCCCAGCACTAGAATAACTGTGGCCAAGCTCATGGACAACCCTTGGTTCAAGAAGGGATTCAAACCGATTGTAGCCCCACAACCCAATCGAAATGATTCGATGAGCGATGAAACAACAAGCAGCATGAAGCCAACTTGTTTGAATGCCTTCGATATCATCTCTCTCTCACCCGGGTTTGATCTGTCAGGTCTGTTTGAGAAAGATACCAATCATAGGCCAGACGCTCGGTTCACCACCAAACAGCCTGCATCAACCATTGTATCCAAACTGGAAGAAATAGCAGAAATGGAGAGATTTAAGGTTAAGAAAAAGGATGGGACGGTGAAGTTGCAAGGCAGCAAGGAAGGGAGAAAGGGTCAGCTTGCTATAGATGCTGAAATTTTCGAGGTCACGCCTTCACTTTTCGTGGTGGAGGTGAAGAAAACGGCAGGTGACACCTTGGAGTATAAGAAGTTCTGTAACCAAGATTTGAAGCCTTCACTCAAGGATATCGTATGGACTTGGCAAGGAAATGGAGTCAAAAGTAATGAAAGAAATTACAGCATCTGCAAATGTATCGTTCATTTCTTGTCTCATTAA 1128 47.16 MEKKGVILMQRYEMGRMLGQGTFAKVYHARNLKSGQSKLKEDAARKYFQQLIGAVDFCHSRGVYHRDLKPENLLLDENGDLKVTDFGLSALWDSRRHDGLLHTTCGTPAYVAPEVINKKGYDGAKADMWSCGVILFVLMAGFLPFHDPNLMEMYRKISRGEFKCPQWFPLEVRKLLSKILDPSPSTRITVAKLMDNPWFKKGFKPIVAPQPNRNDSMSDETTSSMKPTCLNAFDIISLSPGFDLSGLFEKDTNHRPDARFTTKQPASTIVSKLEEIAEMERFKVKKKDGTVKLQGSKEGRKGQLAIDAEIFEVTPSLFVVEVKKTAGDTLEYKKFCNQDLKPSLKDIVWTWQGNGVKSNERNYSICKCIVHFLSH* 376
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2790461 2792177 + Vvi10g228 Vvi10g228 770827
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g228 375 ProSitePatterns Serine/Threonine protein kinases active-site signature. 63 75 IPR008271 GO:0004672|GO:0006468
Vvi10g228 375 ProSiteProfiles Protein kinase domain profile. 1 199 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g228 375 PANTHER - 37 358 - -
Vvi10g228 375 PANTHER - 2 37 - -
Vvi10g228 375 SMART serkin_6 12 199 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g228 375 Gene3D Kinase associated domain 1, KA1 231 350 - -
Vvi10g228 375 Pfam NAF domain 227 286 IPR004041 GO:0007165
Vvi10g228 375 ProSiteProfiles NAF domain profile. 225 249 IPR018451 GO:0007165
Vvi10g228 375 CDD CIPK_C 231 345 - -
Vvi10g228 375 Pfam Protein kinase domain 35 199 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g228 375 ProSitePatterns Protein kinases ATP-binding region signature. 18 46 IPR017441 GO:0005524
Vvi10g228 375 Gene3D Transferase(Phosphotransferase) domain 1 34 230 - -
Vvi10g228 375 SUPERFAMILY Protein kinase-like (PK-like) 5 213 IPR011009 -
Vvi10g228 375 PANTHER CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 20 37 358 - -
Vvi10g228 375 PANTHER CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 20 2 37 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75970 PF00069 Pkinase 1.00E-45 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g228 K07198 - vvi:100258329 642.114