Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi10g229 | ATGACCTATAAAAAGCCTTGTTCCCCCACTCCAAACGATTTAGACATCATCCATGGCAGACAGGCAGAGCAAGGAGAACACAAGCAAAAGGAAGAACGGGGAGAACCAATCTTTGCTTCTGGGGCGGTACGAGATCGGGAAGCTTCTGGGGCATGGGACATTCGCCAAGGTCTACCACGCCAGGAACGTCGGATCCAACGAGAGCGTGGCCATCAAAGTCATCGACAAGGAGAAGATCCTCAAAGGCGGTTTGATCGCACATATCAAGCGCGAGATCTCCATACTCCGCCGCGGGTCTACCACCGCGACCTCAAGCCCGAGAATCTCTTACTGGACGAAGCCGGTGACCTCAAAGTCTCCGATTTTGGGCTTAGCGCTGTCTCTGATCAGATGAGGCAGGATGGCCTGTTCCACACCTTTTGTGGGACTCCGGCGTATGTGGCACCTGAGGTTTTGGCCCGGAAGGGCTATGACGCATCCAAGGTTGATATATGGTCGTGCGGTGTGATACTCTTCGTCTTGATGGCTGGGTATCTCCCTTTCCATGATCAGAACATCATGGCCATGTACAAGAAAATCTACAAGGGTGAATTCCGATGCCCTCGAATCGGTGGTTTAAGAAAGGATGATGTGGATTTGAATGCATTTGATATTATATCATTTTCACCAGGTTTCGATCTCTCTGGATTGTTTGAGGAGGGAGGTGGAGACGCGCGATTTGTGTCGGGTGCACCTGTATCGAAGATTATATCAAAATTAGAGGAGATTGCCAAGGTGGTGAGCTTTACAGTGAGGAAGAAGGATTGTAGGGTGAGCTTAGAGGGATCCAGAGAGGGGGTGAAGGGGCCATTAACGATTGCAGCTGAGATTTTTGAGTTAACGCCCTCATTGGTGGTGGTGGAAGTTAAGAAGAAAGGAGGCGACAAAGGGGAGTATGAGGAGTTCTGTAATCGTGAATTAAAACCCGTGTTGCAGAACCTTAACCTTGTGGTGGATGACTCTGCTTCTACACCACATTTGCCCTCAGATACTGAATAG | 1038 | 49.61 | MTYKKPCSPTPNDLDIIHGRQAEQGEHKQKEERGEPIFASGAVRDREASGAWDIRQGLPRQERRIQRERGHQSHRQGEDPQRRFDRTYQARDLHTPPRVYHRDLKPENLLLDEAGDLKVSDFGLSAVSDQMRQDGLFHTFCGTPAYVAPEVLARKGYDASKVDIWSCGVILFVLMAGYLPFHDQNIMAMYKKIYKGEFRCPRIGGLRKDDVDLNAFDIISFSPGFDLSGLFEEGGGDARFVSGAPVSKIISKLEEIAKVVSFTVRKKDCRVSLEGSREGVKGPLTIAAEIFELTPSLVVVEVKKKGGDKGEYEEFCNRELKPVLQNLNLVVDDSASTPHLPSDTE* | 346 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 2805502 | 2807184 | - | Vvi10g229 | Vvi10g229 | 770828 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi10g229 | 345 | CDD | CIPK_C | 214 | 325 | - | - | |
Vvi10g229 | 345 | MobiDBLite | consensus disorder prediction | 1 | 92 | - | - | |
Vvi10g229 | 345 | MobiDBLite | consensus disorder prediction | 57 | 92 | - | - | |
Vvi10g229 | 345 | Gene3D | Kinase associated domain 1, KA1 | 215 | 329 | - | - | |
Vvi10g229 | 345 | PANTHER | NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE | 211 | 329 | - | - | |
Vvi10g229 | 345 | PANTHER | NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE | 78 | 202 | - | - | |
Vvi10g229 | 345 | SMART | serkin_6 | 16 | 241 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vvi10g229 | 345 | Pfam | NAF domain | 213 | 266 | IPR004041 | GO:0007165 | |
Vvi10g229 | 345 | ProSiteProfiles | NAF domain profile. | 208 | 232 | IPR018451 | GO:0007165 | |
Vvi10g229 | 345 | Gene3D | Transferase(Phosphotransferase) domain 1 | 91 | 214 | - | - | |
Vvi10g229 | 345 | ProSiteProfiles | Protein kinase domain profile. | 1 | 324 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vvi10g229 | 345 | Pfam | Protein kinase domain | 97 | 205 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vvi10g229 | 345 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 99 | 111 | IPR008271 | GO:0004672|GO:0006468 | |
Vvi10g229 | 345 | MobiDBLite | consensus disorder prediction | 19 | 40 | - | - | |
Vvi10g229 | 345 | SUPERFAMILY | Protein kinase-like (PK-like) | 93 | 201 | IPR011009 | - | |
Vvi10g229 | 345 | PANTHER | - | 78 | 202 | - | - | |
Vvi10g229 | 345 | PANTHER | - | 211 | 329 | - | - |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
75971 | PF00069 | Pkinase | 1.20E-30 | CL0016 | Vvi | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi10g229 | - | - | atr:18433582 | 255.758 |