Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g229 ATGACCTATAAAAAGCCTTGTTCCCCCACTCCAAACGATTTAGACATCATCCATGGCAGACAGGCAGAGCAAGGAGAACACAAGCAAAAGGAAGAACGGGGAGAACCAATCTTTGCTTCTGGGGCGGTACGAGATCGGGAAGCTTCTGGGGCATGGGACATTCGCCAAGGTCTACCACGCCAGGAACGTCGGATCCAACGAGAGCGTGGCCATCAAAGTCATCGACAAGGAGAAGATCCTCAAAGGCGGTTTGATCGCACATATCAAGCGCGAGATCTCCATACTCCGCCGCGGGTCTACCACCGCGACCTCAAGCCCGAGAATCTCTTACTGGACGAAGCCGGTGACCTCAAAGTCTCCGATTTTGGGCTTAGCGCTGTCTCTGATCAGATGAGGCAGGATGGCCTGTTCCACACCTTTTGTGGGACTCCGGCGTATGTGGCACCTGAGGTTTTGGCCCGGAAGGGCTATGACGCATCCAAGGTTGATATATGGTCGTGCGGTGTGATACTCTTCGTCTTGATGGCTGGGTATCTCCCTTTCCATGATCAGAACATCATGGCCATGTACAAGAAAATCTACAAGGGTGAATTCCGATGCCCTCGAATCGGTGGTTTAAGAAAGGATGATGTGGATTTGAATGCATTTGATATTATATCATTTTCACCAGGTTTCGATCTCTCTGGATTGTTTGAGGAGGGAGGTGGAGACGCGCGATTTGTGTCGGGTGCACCTGTATCGAAGATTATATCAAAATTAGAGGAGATTGCCAAGGTGGTGAGCTTTACAGTGAGGAAGAAGGATTGTAGGGTGAGCTTAGAGGGATCCAGAGAGGGGGTGAAGGGGCCATTAACGATTGCAGCTGAGATTTTTGAGTTAACGCCCTCATTGGTGGTGGTGGAAGTTAAGAAGAAAGGAGGCGACAAAGGGGAGTATGAGGAGTTCTGTAATCGTGAATTAAAACCCGTGTTGCAGAACCTTAACCTTGTGGTGGATGACTCTGCTTCTACACCACATTTGCCCTCAGATACTGAATAG 1038 49.61 MTYKKPCSPTPNDLDIIHGRQAEQGEHKQKEERGEPIFASGAVRDREASGAWDIRQGLPRQERRIQRERGHQSHRQGEDPQRRFDRTYQARDLHTPPRVYHRDLKPENLLLDEAGDLKVSDFGLSAVSDQMRQDGLFHTFCGTPAYVAPEVLARKGYDASKVDIWSCGVILFVLMAGYLPFHDQNIMAMYKKIYKGEFRCPRIGGLRKDDVDLNAFDIISFSPGFDLSGLFEEGGGDARFVSGAPVSKIISKLEEIAKVVSFTVRKKDCRVSLEGSREGVKGPLTIAAEIFELTPSLVVVEVKKKGGDKGEYEEFCNRELKPVLQNLNLVVDDSASTPHLPSDTE* 346
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2805502 2807184 - Vvi10g229 Vvi10g229 770828
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g229 345 CDD CIPK_C 214 325 - -
Vvi10g229 345 MobiDBLite consensus disorder prediction 1 92 - -
Vvi10g229 345 MobiDBLite consensus disorder prediction 57 92 - -
Vvi10g229 345 Gene3D Kinase associated domain 1, KA1 215 329 - -
Vvi10g229 345 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 211 329 - -
Vvi10g229 345 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 78 202 - -
Vvi10g229 345 SMART serkin_6 16 241 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g229 345 Pfam NAF domain 213 266 IPR004041 GO:0007165
Vvi10g229 345 ProSiteProfiles NAF domain profile. 208 232 IPR018451 GO:0007165
Vvi10g229 345 Gene3D Transferase(Phosphotransferase) domain 1 91 214 - -
Vvi10g229 345 ProSiteProfiles Protein kinase domain profile. 1 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g229 345 Pfam Protein kinase domain 97 205 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g229 345 ProSitePatterns Serine/Threonine protein kinases active-site signature. 99 111 IPR008271 GO:0004672|GO:0006468
Vvi10g229 345 MobiDBLite consensus disorder prediction 19 40 - -
Vvi10g229 345 SUPERFAMILY Protein kinase-like (PK-like) 93 201 IPR011009 -
Vvi10g229 345 PANTHER - 78 202 - -
Vvi10g229 345 PANTHER - 211 329 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75971 PF00069 Pkinase 1.20E-30 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g229 - - atr:18433582 255.758