Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g23 ATGGCAACATCCCTTGAACCTCTGCTACGCTCTTCCCAAATCAAAGCCTCTCACTGCAAGTCTCTCTATTTGGTCATCTTCTTAGCTGCTATCATAACCCCCATTGCTCTCTTTTCTATCCCTCTTATCAAAACCATCTCCACTGGCCCTCCCCGTGTGCTCCACAACCATGTGATGGAAATGGAAGATGTGGATCAACTTCAGAGGTTCCTAAAGGAATCCATGTCACACTTGCAAGGTGTGATGGAGATGACGGTCGATGTCAACCGTCGGATGAATGACCCTAGGGATCAAGCTGCTCTGTCTGACTGTGTGGAGCTCATGGACTTGTCCATGGGCAGGATAAGGGACTCTGTGGAGGCCCTTGGAAGGGGGACGGTCGATTCCCACGCAGATGCTCATGCCTGGCTTAGTGGTGTCCTCACCAATTATATCACCTGCACGGATGGGATAAATGGGCCATCCAGAATTTCAATGGAACGTGGCCTCAAACACTTGATCTCAAGAGCAGAAACCTCACTGGCCATGCTTGTTGCAGTTTCACCTGCCAAAGAGGATGTTCTCCAGCCACTTCACAGTGAATTTCCACCATGGGTGGACAGCAGAGACAGGAAAATCTTGGAGAGTTCGTCTAAGGACATTAAGGCCAATGTTGTGGTGGCAAAGGATGGAAGTGGGAACTACAAAACAGTGAAAGAAGCCATAGCATCAGTCCCAAATAATAGCAAGACCCGATATGTCATCCATGTGAAGAAGGGAACATATAAAGAGAATGTTGAAATTGTCACGAAACAGAAAAATGTGATGATCGTTGGAGATGGCATGGATTCAACGGTTATCACAGGAAGCCTAAATGTTATCGATGGTTCCACAACCTTCAAGTCAGCAACTCTTGCTGCCGTTGGTGATGGGTTCATAGCACAAGATATCTGGTTCCAAAACACAGCAGGACCTCAGAAGCATCAAGCAGTGGCGCTTCGAGTTGGGGCTGATCAAGCCGTCATAAACCGATGCCGCATCGACGCCTACCAGGACACACTCTATGCACACACCAACAGACAATTCTACAGAGATTGCTACATCACTGGTACCGTGGATTTCATATTTGGTAATGCAGCAGTTGTGTTTCAAAACTGCAAGCTAGTAGCCCGAAAGCCCATGGATAAACAAGCCAACATGGTCACAGCCCAAGGCCGAACCAACCCATATCAGAACACTGGAACTTCAATCCAAAACTGCAACATAATAGCCAGCTCTGATCTTGAGCCTGTAAAGGGCACCATAAAATCATACCTGGGTCGACCCTGGAAGGAATACTCTAGGGCTGTGGTCCTGCAGTCATACATTGGAGATCATATTGATCCAGCAGGGTGGTCAGTCAAACGCGTTAAATGGCCAGGCTATCGCGTCATTACCAGTCCCGCGGAGGCCAGAAATTTCACAGTAGCTGAGCTGATTCAAGGAGGGACCTGGTTGGAGTCCACTGGTGTGGCTTACACAGAAGGGTTGTGA 1512 48.28 MATSLEPLLRSSQIKASHCKSLYLVIFLAAIITPIALFSIPLIKTISTGPPRVLHNHVMEMEDVDQLQRFLKESMSHLQGVMEMTVDVNRRMNDPRDQAALSDCVELMDLSMGRIRDSVEALGRGTVDSHADAHAWLSGVLTNYITCTDGINGPSRISMERGLKHLISRAETSLAMLVAVSPAKEDVLQPLHSEFPPWVDSRDRKILESSSKDIKANVVVAKDGSGNYKTVKEAIASVPNNSKTRYVIHVKKGTYKENVEIVTKQKNVMIVGDGMDSTVITGSLNVIDGSTTFKSATLAAVGDGFIAQDIWFQNTAGPQKHQAVALRVGADQAVINRCRIDAYQDTLYAHTNRQFYRDCYITGTVDFIFGNAAVVFQNCKLVARKPMDKQANMVTAQGRTNPYQNTGTSIQNCNIIASSDLEPVKGTIKSYLGRPWKEYSRAVVLQSYIGDHIDPAGWSVKRVKWPGYRVITSPAEARNFTVAELIQGGTWLESTGVAYTEGL* 504
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 256136 258276 + Vvi10g23 Vvi10g23 770622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g23 503 Pfam Plant invertase/pectin methylesterase inhibitor 92 178 IPR006501 GO:0004857
Vvi10g23 503 SMART PMEI_2 59 176 IPR006501 GO:0004857
Vvi10g23 503 PANTHER PECTINESTERASE 461 501 - -
Vvi10g23 503 PANTHER PECTINESTERASE 56 460 - -
Vvi10g23 503 PANTHER PECTINESTERASE 461 501 - -
Vvi10g23 503 PANTHER PECTINESTERASE 56 460 - -
Vvi10g23 503 ProSitePatterns Pectinesterase signature 1. 242 261 IPR018040 -
Vvi10g23 503 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 65 176 IPR035513 -
Vvi10g23 503 Gene3D - 211 503 IPR012334 -
Vvi10g23 503 ProSitePatterns Pectinesterase signature 2. 361 370 IPR033131 -
Vvi10g23 503 Pfam Pectinesterase 217 459 IPR000070 GO:0030599|GO:0042545
Vvi10g23 503 TIGRFAM PME_inhib: pectinesterase inhibitor domain 89 156 IPR006501 GO:0004857
Vvi10g23 503 SUPERFAMILY Pectin lyase-like 215 502 IPR011050 -
Vvi10g23 503 Gene3D Invertase/pectin methylesterase inhibitor family protein 58 183 IPR035513 -
Vvi10g23 503 CDD PMEI-like_4 19 181 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g23 K01051 - vvi:100253692 988.793