Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g242 ATGATGCAATCTGGGGTTCCACCCTGCACCACCTGTGGTGAACCTGTGGGGTTTGATTCAAATGGGGAGGTGTTTGTGGCATGTCATGAGTGCAATTTCCCTGTTTGCAAGTCTTGTTTGGACTATGAAATCAAGGAAGGGCGCAAGGTCTGCTTGCGCTGTAGCACTCCCTATGATGAGAGCTCAACAATGGCTGATGTTGAAACAAATCAATCCAGCAACCATTCCACCATGGCTGCGCACCTCAATGATGCTCAGGATGTTGGAATGCATACTAGACATGTCAGTACTGTGTCGACAGTGGATAGTGAACTAAATGATGATTCTGGGAATCCAATATGGAAGAATAGGGTGGAGAGTTGGAAGGACAAAAAGAGCAAGAAGAAAAAGGCTACCAGTAAGGCTAAACATGAAGCTGAAATTCCACCTGAGCAGCAAATGGAAGAAAAGCAGTCTGCAGATGCTGCACAGCCACTTTCGACAGTAGTTCCACTTCCACGTAACAAGCTCACACCATACAGAGGTGTGATTATTATGCGATTGATCATTCTGGCGCTTTTCTTCCATTATAGAATAACAAATCCTGTTGATAGTGCTTATGGTCTGTGGCTCACATCTATTATTTGTGAGATCTGGTTTGCTGTTTCTTGGGTGTTGGATCAGTTCCCTAAATGGACTCCCATTAACAGGGAGACATTTATTGACAGGCTATCTGCAAGGTATGAAAGAGAGGGCGAACCCTCAGAGCTTGCTGCTGTGGACTTCTTTGTGAGTACAGTGGATCCACTGAAAGAACCGCCATTGATCACTGCCAATACTGTCCTTTCAATCCTTGCTGTGGACTACCCTGTTGACAAAGTCTCCTGCTATGTGTCTGATGATGGCTCTGCCATGCTTTCATTTGAATCTCTTGTTGAAACAGCTGATTTTGCAAGGAAGTGGGTTCCATTCTGTAAAAAGTTTTCAATTGAACCACGCGCACCTGAGTTTTACTTCTCACAGAAAATTGACTACCTGAAGGATAAAATCCAACCTTCTTTTGTGAAAGAACGTAGAGCAATGAAAAGAGATTACGAAGAGTTCAAAGTGCGGGTAAATGCATTAGTGGCAAAGGCTCAGAAAACACCAGAGGAGGGCTGGACTATGCAAGATGGAACAGCTTGGCCTGGAAATAATCCACGTGACCACCCTGGCATGATTCAGGTTTTTCTTGGACATAGTGGTGCTCATGATATAGAGGGAAATGAACTTCCTCGGCTTGTGTATGTCTCAAGAGAGAAGAGGCCTGGCTACCAACACCACAAAAAGGCTGGTGCTGAAAATGCTCTGGTGAGGGTATCTGCAGTGCTCACAAATGCTCCCTTCATTCTTAACCTTGATTGTGATCACTATGTAAACAACAGCAAGGCAGTTCGTGAGGCAATGTGTTTCTTGATGGACCCACTAGTTGGACAAGATGTATGCTATGTCCAGTTCCCTCAGAGGTTCGATGGCATTGATCGCAGTGATCGATATGCCAATCGCAACACGGTCTTCTTTGATGTGAATATGAAAGGACTGGATGGCATTCAAGGACCAGTTTATGTGGGAACAGGTTGTGTTTTCAATAGGCAAGCACTCTATGGCTATGGCCCTCCAAATCTGCCCAATTTACCAAAGGCTTCTTCATCATCATCATCATGCTCATGGTGTGGCTGTTGTTCCTGTTGCTGCCCCTCCAAGAAGCCCTCTAAAGATCTCTCAGAGGTTTATCGAGACTCCAAGAGGGACGATCTAAATGCAGCCATCTTTAACCTCAAGGAGATTGATAATTATGACGAGCATGAGAGGTCACTGCTTATCTCCCAGATGAGCTTTGAGAAGACTTTTGGCTTATCTTCTGTGTTCATCGAGTCAACACTAATGGAGAATGGAGGAGTGCCTGAATCCGCCAACTCGCCTATACTGATCAAGGAAGCAATTCACGTCATTAGCTGTGGTTATGAAGAGAAGACAGAGTGGGGAAAAGAGATTGGCTGGATATATGGGTCGGTCACTGAGGATATCTTAACGGGTTTCAAGATGCATTGCCGAGGATGGAGATCACTTTACTGTATGCCCTTAAGGCCTGCATTTAAAGGATCAGCACCCATCAATCTGTCTGATCGTCTTCACCAGGTTCTCCGATGGGCCCTCGGATCTGTGGAGATTTTCCTGAGTAGACACTGCCCTCTCTGGTATGGGTTTGGAGGAGGCCGCCTCAAATGGCTCCAAAGGATGGCATACATAAACACCATTGTTTACCCATTTACATCTCTCCCTCTCATAGCATACTGCTCCCTCCCTGCTATATGCCTTCTCACAGGGAAATTTATCATACCAACGCTTTCAAACCTAGCAAGCGTCTGGTTTCTTGGCCTCTTCATCTCCATCATTTTGACCAGTGTGCTTGAGCTTCGGTGGAGTGGTGTAAGCATAGAAGACTTGTGGCGTAATGAGCAGTTTTGGGTCATTGGAGGTGTCTCAGCCCACCTCTTCGCCGTCTTCCAAGGATTTCTGAAGATGGTAGCTGGCCTTGACACCAACTTCACTGTGACTGCAAAAGCTGCAGATGATGGAGAGTTCGGTGAGCTCTACATGATCAAGTGGACAACACTTCTCATCCCTCCAACAACCCTTCTCATTATCAACTTGGTGGGTGTTGTTGCTGGATTTTCCGACGCTCTGAACAGCGGGTATGAAGCCTGGGGGCCACTCTTCGGCAAGGTATTCTTTGCCTTCTGGGTGATTCTCCACCTCTACCCATTCCTCAAAGGTCTCATGGGTCGGCAGAACCGGACGCCCACCATTGTTGTCCTATGGTCAGTGCTGCTGGCCTCTGTCTTCTCCCTCGTTTGGGTGAAGATAAATCCTTTCGTGCAAAAAGTCGATAATTCAACCATCGCCCAGAGCTGCATTTCCATTGATTGTTAA 2952 46.27 MMQSGVPPCTTCGEPVGFDSNGEVFVACHECNFPVCKSCLDYEIKEGRKVCLRCSTPYDESSTMADVETNQSSNHSTMAAHLNDAQDVGMHTRHVSTVSTVDSELNDDSGNPIWKNRVESWKDKKSKKKKATSKAKHEAEIPPEQQMEEKQSADAAQPLSTVVPLPRNKLTPYRGVIIMRLIILALFFHYRITNPVDSAYGLWLTSIICEIWFAVSWVLDQFPKWTPINRETFIDRLSARYEREGEPSELAAVDFFVSTVDPLKEPPLITANTVLSILAVDYPVDKVSCYVSDDGSAMLSFESLVETADFARKWVPFCKKFSIEPRAPEFYFSQKIDYLKDKIQPSFVKERRAMKRDYEEFKVRVNALVAKAQKTPEEGWTMQDGTAWPGNNPRDHPGMIQVFLGHSGAHDIEGNELPRLVYVSREKRPGYQHHKKAGAENALVRVSAVLTNAPFILNLDCDHYVNNSKAVREAMCFLMDPLVGQDVCYVQFPQRFDGIDRSDRYANRNTVFFDVNMKGLDGIQGPVYVGTGCVFNRQALYGYGPPNLPNLPKASSSSSSCSWCGCCSCCCPSKKPSKDLSEVYRDSKRDDLNAAIFNLKEIDNYDEHERSLLISQMSFEKTFGLSSVFIESTLMENGGVPESANSPILIKEAIHVISCGYEEKTEWGKEIGWIYGSVTEDILTGFKMHCRGWRSLYCMPLRPAFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPLWYGFGGGRLKWLQRMAYINTIVYPFTSLPLIAYCSLPAICLLTGKFIIPTLSNLASVWFLGLFISIILTSVLELRWSGVSIEDLWRNEQFWVIGGVSAHLFAVFQGFLKMVAGLDTNFTVTAKAADDGEFGELYMIKWTTLLIPPTTLLIINLVGVVAGFSDALNSGYEAWGPLFGKVFFAFWVILHLYPFLKGLMGRQNRTPTIVVLWSVLLASVFSLVWVKINPFVQKVDNSTIAQSCISIDC* 984
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2942224 2949213 - Vvi10g242 Vvi10g242 770841
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g242 983 MobiDBLite consensus disorder prediction 133 147 - -
Vvi10g242 983 Pfam Zinc-binding RING-finger 9 74 IPR027934 -
Vvi10g242 983 MobiDBLite consensus disorder prediction 98 158 - -
Vvi10g242 983 Pfam Cellulose synthase 253 974 IPR005150 GO:0016020|GO:0016760|GO:0030244
Vvi10g242 983 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 80 IPR013083 -
Vvi10g242 983 SUPERFAMILY Nucleotide-diphospho-sugar transferases 267 776 IPR029044 -
Vvi10g242 983 PANTHER CELLULOSE SYNTHASE A CATALYTIC SUBUNIT 8 [UDP-FORMING] 2 983 - -
Vvi10g242 983 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 2 983 - -
Vvi10g242 983 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 406 545 IPR029044 -
Vvi10g242 983 SUPERFAMILY RING/U-box 2 76 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g242 K10999 - vvi:100261696 1959.5