Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g246 ATGGACGGCAGATTCAACAGTAACCCATTTGTTAGTGAACAAGAAGAGCAGGAAAACTCACCGGAAAATAGTGGAGACTCGCCACCTTCTCCTATGTTTAATGATGCAAAGATCTCTTCTTCTACGTCTTCCCCCAAACGAAGTAGGCGAGCCATGCAAAAGAGAGTGGTGTCAGTGCCCATCAAGGATGTGGAAGGCTCACGAGTCAAGGGGGACTGTGCTCCACCATCCGATTCATGGGCTTGGAGGAAGTATGGTCAGAAGCCCATCAAAGGCTCTCCATATCCCAGAGGGTATTACAGGTGCAGCAGTTCAAAAGGCTGCCCAGCTAGGAAGCAAGTTGAGAGAAGCCGCGTGGACCCCACCATGCTTGTTGTGACGTACTCTTGCGAACACAACCATCCATGGCCGGCTTCTAGAAACCACCACAACACCACCAATCCCCCCACCACGGCGGCCGCCACCCCTACTCCCACCTCGGCGCCTGCTACTCCTCCCTCACCCAAACCAGCAATTTTCTCAAGCCAAGCCGAACCCGACCCGGACGAAAAGTTCACTGACCTAGGCGAGGAATCGCTGATCACAACCGAAGATTTCACCTGGTTTTCGGACTTCGAATCCCCCTCTTCCACGATGCTGGAGAGCCCGATTTTCGCGGAGAACAATGTCAGAGACGCCGACGTGGCGATGTTCTTCCCGATGAGGGAAGAGGATGAATCGCTGTTCGCCGATCTCGGGGAGTTGCCGGAGTGTTCTCTTGTGTTTCGGCGAGGGGTATTGGAGATGGAGGAGGAGCGCCGACGGTGTACGGTACCCATGTGTGGGACCACAAGCTGA 837 54.48 MDGRFNSNPFVSEQEEQENSPENSGDSPPSPMFNDAKISSSTSSPKRSRRAMQKRVVSVPIKDVEGSRVKGDCAPPSDSWAWRKYGQKPIKGSPYPRGYYRCSSSKGCPARKQVERSRVDPTMLVVTYSCEHNHPWPASRNHHNTTNPPTTAAATPTPTSAPATPPSPKPAIFSSQAEPDPDEKFTDLGEESLITTEDFTWFSDFESPSSTMLESPIFAENNVRDADVAMFFPMREEDESLFADLGELPECSLVFRRGVLEMEEERRRCTVPMCGTTS* 279
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3008686 3010451 + Vvi10g246 Vvi10g246 770845
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g246 278 MobiDBLite consensus disorder prediction 1 88 - -
Vvi10g246 278 SUPERFAMILY WRKY DNA-binding domain 73 137 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi10g246 278 MobiDBLite consensus disorder prediction 139 158 - -
Vvi10g246 278 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 1 262 IPR044810 GO:0003700
Vvi10g246 278 SMART WRKY_cls 76 136 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi10g246 278 MobiDBLite consensus disorder prediction 1 47 - -
Vvi10g246 278 MobiDBLite consensus disorder prediction 135 185 - -
Vvi10g246 278 Gene3D WRKY domain 64 138 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi10g246 278 ProSiteProfiles WRKY domain profile. 71 137 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi10g246 278 PANTHER WRKY TRANSCRIPTION FACTOR 65-RELATED 1 262 - -
Vvi10g246 278 Pfam WRKY DNA -binding domain 78 135 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13658 PF03106 WRKY 3.10E-25 CL0274 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g246 - - vvi:100244564 526.168