Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi10g251 | ATGATGTCAAGATCGTATACCAATCTTTTAGATCTAGCTTCCGGGAACTTTCCGCTGATGGGGCAAAGAAAGCGGCTGCCTCGAGTAATGACCGTTCCTGGTGTTATATCAGAGCTTGATGATGATCAAGCTAATAGTGTGACCTCAGATGTTCCATCCTCTATCGTCCAAGATCGTGTAATAATTGTAGCTAATCAGCTTCCAGTAAAAGCTAAGCGCAGGCCGGATAATAAAGGGTGGAGTTTTAGTTGGGATGAGGACTCCCTGTTATTGCAACTTAAAGATGGCTTGCCCGATGATATGGAGGTTTTGTCTTTGTGGGAGGCCTATGTGTCTGCTAATAAGATCTTTTCGCAGAGGGTGATTGAGGTGTTAAACCCTGAAGATGACTATGTTTGGATTCATGATTACCATTTGATGGTGTTGCCGACCTTTTTGCGAAGACGGTTTAACAGATTGAGAATGGGTTTTTTCCTTCATAGTCCATTTCCTTCATCTGAGATATATAGGACCCTACCAGTGAGAGAAGAGATACTTAAGGCACTCTTGAATTCAGACCTTATTGGTTTCCACACTTTTGATTATGCCCGGCATTTCCTTTCTTGTTGTAGTCGGATGTTGGGTTTGGAGTATCAGTCAAAGAGGGGTTATATTGGTTTGGAATATTATGGAAGGACTGTTGGAATAAAGATTATGCCAGTTGGGGTTCACATGGGGCAGATTGAATCTGTGTTGAGATTTGCAGATAAGGAATGGCGGGTGGGAGAGCTTAAACAGCAGTTTGAGGGAAAGACTGTGCTACTGGGTGTTGATGACATGGACATCTTTAAAGGTGTCAATTTGAAGTTGTTGGCAATGGAGCAGATGCTCACACAGCATCCAAAGTGGCAAGGAAGGGCAGTGTTGGTACAGATTGCAAACCCTGCTAGGGGGAGTGGGAGAGATCTCGAGGTGATACAGGCTGAAATACAGGCAAGCTGTAAGAGAATTAATGAAAATTTTGGGCAGCCAGGTTATGAACCGATTGTATTTATTGATAGGCCAGTTTCTCTTAGTGAGAAAGCTGCATTTTACACCATTGCCGAGTGTGTCGTAGTGACAGCTGTCAGGGATGGAATGAACCTTATCCCATATGAGTATATCGTGTCCAGGCAGGGAGTCTCTGGATCTGAATCTGGTTCTGAATCAAGTGGCCCCAAGAAGAGCATGCTAGTGGTATCAGAGTTCATAGGATGCTCTCCTTCGCTGAGTGGTGCCATTAGAGTCAATCCATGGAATGTTGAAGCAACTGCTGAGGCAATGAATGAGGCAATTTCTATGGCTGATGCTGAGAAGCAATTGCGTCACGAGAAGCATTACAGGTATGTTAGTACACATGATGTGGCATATTGGTCGAAAAGTTTTTTCCAGGATATGGAGCGGTCTTGTAAAGACCATTTTAGGAGATGGTGTTGGGGAATTGGGTTGAGCTTCGGTTTCAGAGTTGTAGCCCTCGATCCTAACTTCAGAAAGTTGTCTATTGATTCTATTGTATCTGCATATTCAAGGGCCAAAAATAGGGCCATCCTTTTGGATTATGATGGGACTGTAATGCCTCAGACATCCATCAATAAGACTCCAAGTGAAGATGTTATCTTAATCTTGAACACGCTTTGTAGTGACCCTAGAAATACAGTGTTTGTTGTTAGTGGAAGGGGAAGGGATAGCTTAGGCAAGTGGTTTTCTCCTTGCAACAGGCTTGGAATTGCAGCAGAACATGGATACTTCTTAAGGTGGTCTGTGAATGAAGAATGGGAAATCTGTGGTCAGAGTAATGATTTTGGGTGGATACAGATGGCTGAGCCTGTAATGAAATTGTACACAGAAGCTACTGATGGTTCTTATATTGAAACCAAGGAGAGTGCCTTGGTTTGGCACCATCAGGATGCAGACCCAGGTTTTGGCTCTAGCCAGGCCAAGGAGATGTTAGACCATCTAGAAAGTGTGCTAGCAAATGAACCTGTTGCTGTGAAAAGTGGTCAATTCATTGTAGAAGTGAAGCCACAGGGCATCAGTAAAGGTGTGGTTGCGGAAAAGATCTTCACTTCAATGGCAGAGAGGGGAAGGCAGGCTGATTTTGTGTTGTGTGTAGGTGATGACAGATCTGATGAGCATATGTTTGAAATCATTGGTAATGCAGTATCGAGTGGGATCCTCTCCTCTAATACATCAGTTTTTGCCTGCACGGTTGGACAGAAACCAAGTAAAGCCAAGTACTATTTGGATGACACAACTGAGGTCATAAACATGCTTGATGCTCTTGCTGATGCTTCAGACCCTTCCCCATCTCCCGAACTTGAAGCAAGCTCTCCTTGA | 2355 | 43.86 | MMSRSYTNLLDLASGNFPLMGQRKRLPRVMTVPGVISELDDDQANSVTSDVPSSIVQDRVIIVANQLPVKAKRRPDNKGWSFSWDEDSLLLQLKDGLPDDMEVLSLWEAYVSANKIFSQRVIEVLNPEDDYVWIHDYHLMVLPTFLRRRFNRLRMGFFLHSPFPSSEIYRTLPVREEILKALLNSDLIGFHTFDYARHFLSCCSRMLGLEYQSKRGYIGLEYYGRTVGIKIMPVGVHMGQIESVLRFADKEWRVGELKQQFEGKTVLLGVDDMDIFKGVNLKLLAMEQMLTQHPKWQGRAVLVQIANPARGSGRDLEVIQAEIQASCKRINENFGQPGYEPIVFIDRPVSLSEKAAFYTIAECVVVTAVRDGMNLIPYEYIVSRQGVSGSESGSESSGPKKSMLVVSEFIGCSPSLSGAIRVNPWNVEATAEAMNEAISMADAEKQLRHEKHYRYVSTHDVAYWSKSFFQDMERSCKDHFRRWCWGIGLSFGFRVVALDPNFRKLSIDSIVSAYSRAKNRAILLDYDGTVMPQTSINKTPSEDVILILNTLCSDPRNTVFVVSGRGRDSLGKWFSPCNRLGIAAEHGYFLRWSVNEEWEICGQSNDFGWIQMAEPVMKLYTEATDGSYIETKESALVWHHQDADPGFGSSQAKEMLDHLESVLANEPVAVKSGQFIVEVKPQGISKGVVAEKIFTSMAERGRQADFVLCVGDDRSDEHMFEIIGNAVSSGILSSNTSVFACTVGQKPSKAKYYLDDTTEVINMLDALADASDPSPSPELEASSP* | 785 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 3105504 | 3113122 | + | Vvi10g251 | Vvi10g251 | 770850 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi10g251 | 784 | Gene3D | Glycogen Phosphorylase B; | 88 | 248 | - | - | |
Vvi10g251 | 784 | Pfam | Glycosyltransferase family 20 | 105 | 473 | IPR001830 | GO:0003824|GO:0005992 | |
Vvi10g251 | 784 | TIGRFAM | HAD-SF-IIB: HAD hydrolase, family IIB | 522 | 728 | IPR006379 | - | |
Vvi10g251 | 784 | SUPERFAMILY | HAD-like | 520 | 768 | IPR036412 | - | |
Vvi10g251 | 784 | Gene3D | - | 519 | 635 | IPR023214 | - | |
Vvi10g251 | 784 | Gene3D | - | 648 | 776 | IPR023214 | - | |
Vvi10g251 | 784 | PANTHER | TREHALOSE-6-PHOSPHATE SYNTHASE | 105 | 777 | IPR001830 | GO:0003824|GO:0005992 | |
Vvi10g251 | 784 | PANTHER | TREHALOSE-6-PHOSPHATE SYNTHASE | 1 | 104 | IPR001830 | GO:0003824|GO:0005992 | |
Vvi10g251 | 784 | CDD | HAD_TPP | 521 | 762 | - | - | |
Vvi10g251 | 784 | PANTHER | ALPHA,ALPHA-TREHALOSE-PHOSPHATE SYNTHASE [UDP-FORMING] 7-RELATED | 105 | 777 | - | - | |
Vvi10g251 | 784 | PANTHER | ALPHA,ALPHA-TREHALOSE-PHOSPHATE SYNTHASE [UDP-FORMING] 7-RELATED | 1 | 104 | - | - | |
Vvi10g251 | 784 | TIGRFAM | T6PP: trehalose-phosphatase | 517 | 768 | IPR003337 | GO:0003824|GO:0005992 | |
Vvi10g251 | 784 | Pfam | Trehalose-phosphatase | 523 | 757 | IPR003337 | GO:0003824|GO:0005992 | |
Vvi10g251 | 784 | CDD | GT20_TPS | 59 | 473 | IPR001830 | GO:0003824|GO:0005992 | |
Vvi10g251 | 784 | Gene3D | Glycogen Phosphorylase B; | 249 | 458 | - | - | |
Vvi10g251 | 784 | SUPERFAMILY | UDP-Glycosyltransferase/glycogen phosphorylase | 58 | 477 | - | - |
Event-related genes

Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi10g251 | K16055 | - | vvi:100265140 | 1312.75 |