Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g251 ATGATGTCAAGATCGTATACCAATCTTTTAGATCTAGCTTCCGGGAACTTTCCGCTGATGGGGCAAAGAAAGCGGCTGCCTCGAGTAATGACCGTTCCTGGTGTTATATCAGAGCTTGATGATGATCAAGCTAATAGTGTGACCTCAGATGTTCCATCCTCTATCGTCCAAGATCGTGTAATAATTGTAGCTAATCAGCTTCCAGTAAAAGCTAAGCGCAGGCCGGATAATAAAGGGTGGAGTTTTAGTTGGGATGAGGACTCCCTGTTATTGCAACTTAAAGATGGCTTGCCCGATGATATGGAGGTTTTGTCTTTGTGGGAGGCCTATGTGTCTGCTAATAAGATCTTTTCGCAGAGGGTGATTGAGGTGTTAAACCCTGAAGATGACTATGTTTGGATTCATGATTACCATTTGATGGTGTTGCCGACCTTTTTGCGAAGACGGTTTAACAGATTGAGAATGGGTTTTTTCCTTCATAGTCCATTTCCTTCATCTGAGATATATAGGACCCTACCAGTGAGAGAAGAGATACTTAAGGCACTCTTGAATTCAGACCTTATTGGTTTCCACACTTTTGATTATGCCCGGCATTTCCTTTCTTGTTGTAGTCGGATGTTGGGTTTGGAGTATCAGTCAAAGAGGGGTTATATTGGTTTGGAATATTATGGAAGGACTGTTGGAATAAAGATTATGCCAGTTGGGGTTCACATGGGGCAGATTGAATCTGTGTTGAGATTTGCAGATAAGGAATGGCGGGTGGGAGAGCTTAAACAGCAGTTTGAGGGAAAGACTGTGCTACTGGGTGTTGATGACATGGACATCTTTAAAGGTGTCAATTTGAAGTTGTTGGCAATGGAGCAGATGCTCACACAGCATCCAAAGTGGCAAGGAAGGGCAGTGTTGGTACAGATTGCAAACCCTGCTAGGGGGAGTGGGAGAGATCTCGAGGTGATACAGGCTGAAATACAGGCAAGCTGTAAGAGAATTAATGAAAATTTTGGGCAGCCAGGTTATGAACCGATTGTATTTATTGATAGGCCAGTTTCTCTTAGTGAGAAAGCTGCATTTTACACCATTGCCGAGTGTGTCGTAGTGACAGCTGTCAGGGATGGAATGAACCTTATCCCATATGAGTATATCGTGTCCAGGCAGGGAGTCTCTGGATCTGAATCTGGTTCTGAATCAAGTGGCCCCAAGAAGAGCATGCTAGTGGTATCAGAGTTCATAGGATGCTCTCCTTCGCTGAGTGGTGCCATTAGAGTCAATCCATGGAATGTTGAAGCAACTGCTGAGGCAATGAATGAGGCAATTTCTATGGCTGATGCTGAGAAGCAATTGCGTCACGAGAAGCATTACAGGTATGTTAGTACACATGATGTGGCATATTGGTCGAAAAGTTTTTTCCAGGATATGGAGCGGTCTTGTAAAGACCATTTTAGGAGATGGTGTTGGGGAATTGGGTTGAGCTTCGGTTTCAGAGTTGTAGCCCTCGATCCTAACTTCAGAAAGTTGTCTATTGATTCTATTGTATCTGCATATTCAAGGGCCAAAAATAGGGCCATCCTTTTGGATTATGATGGGACTGTAATGCCTCAGACATCCATCAATAAGACTCCAAGTGAAGATGTTATCTTAATCTTGAACACGCTTTGTAGTGACCCTAGAAATACAGTGTTTGTTGTTAGTGGAAGGGGAAGGGATAGCTTAGGCAAGTGGTTTTCTCCTTGCAACAGGCTTGGAATTGCAGCAGAACATGGATACTTCTTAAGGTGGTCTGTGAATGAAGAATGGGAAATCTGTGGTCAGAGTAATGATTTTGGGTGGATACAGATGGCTGAGCCTGTAATGAAATTGTACACAGAAGCTACTGATGGTTCTTATATTGAAACCAAGGAGAGTGCCTTGGTTTGGCACCATCAGGATGCAGACCCAGGTTTTGGCTCTAGCCAGGCCAAGGAGATGTTAGACCATCTAGAAAGTGTGCTAGCAAATGAACCTGTTGCTGTGAAAAGTGGTCAATTCATTGTAGAAGTGAAGCCACAGGGCATCAGTAAAGGTGTGGTTGCGGAAAAGATCTTCACTTCAATGGCAGAGAGGGGAAGGCAGGCTGATTTTGTGTTGTGTGTAGGTGATGACAGATCTGATGAGCATATGTTTGAAATCATTGGTAATGCAGTATCGAGTGGGATCCTCTCCTCTAATACATCAGTTTTTGCCTGCACGGTTGGACAGAAACCAAGTAAAGCCAAGTACTATTTGGATGACACAACTGAGGTCATAAACATGCTTGATGCTCTTGCTGATGCTTCAGACCCTTCCCCATCTCCCGAACTTGAAGCAAGCTCTCCTTGA 2355 43.86 MMSRSYTNLLDLASGNFPLMGQRKRLPRVMTVPGVISELDDDQANSVTSDVPSSIVQDRVIIVANQLPVKAKRRPDNKGWSFSWDEDSLLLQLKDGLPDDMEVLSLWEAYVSANKIFSQRVIEVLNPEDDYVWIHDYHLMVLPTFLRRRFNRLRMGFFLHSPFPSSEIYRTLPVREEILKALLNSDLIGFHTFDYARHFLSCCSRMLGLEYQSKRGYIGLEYYGRTVGIKIMPVGVHMGQIESVLRFADKEWRVGELKQQFEGKTVLLGVDDMDIFKGVNLKLLAMEQMLTQHPKWQGRAVLVQIANPARGSGRDLEVIQAEIQASCKRINENFGQPGYEPIVFIDRPVSLSEKAAFYTIAECVVVTAVRDGMNLIPYEYIVSRQGVSGSESGSESSGPKKSMLVVSEFIGCSPSLSGAIRVNPWNVEATAEAMNEAISMADAEKQLRHEKHYRYVSTHDVAYWSKSFFQDMERSCKDHFRRWCWGIGLSFGFRVVALDPNFRKLSIDSIVSAYSRAKNRAILLDYDGTVMPQTSINKTPSEDVILILNTLCSDPRNTVFVVSGRGRDSLGKWFSPCNRLGIAAEHGYFLRWSVNEEWEICGQSNDFGWIQMAEPVMKLYTEATDGSYIETKESALVWHHQDADPGFGSSQAKEMLDHLESVLANEPVAVKSGQFIVEVKPQGISKGVVAEKIFTSMAERGRQADFVLCVGDDRSDEHMFEIIGNAVSSGILSSNTSVFACTVGQKPSKAKYYLDDTTEVINMLDALADASDPSPSPELEASSP* 785
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3105504 3113122 + Vvi10g251 Vvi10g251 770850
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g251 784 Gene3D Glycogen Phosphorylase B; 88 248 - -
Vvi10g251 784 Pfam Glycosyltransferase family 20 105 473 IPR001830 GO:0003824|GO:0005992
Vvi10g251 784 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 522 728 IPR006379 -
Vvi10g251 784 SUPERFAMILY HAD-like 520 768 IPR036412 -
Vvi10g251 784 Gene3D - 519 635 IPR023214 -
Vvi10g251 784 Gene3D - 648 776 IPR023214 -
Vvi10g251 784 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 105 777 IPR001830 GO:0003824|GO:0005992
Vvi10g251 784 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 1 104 IPR001830 GO:0003824|GO:0005992
Vvi10g251 784 CDD HAD_TPP 521 762 - -
Vvi10g251 784 PANTHER ALPHA,ALPHA-TREHALOSE-PHOSPHATE SYNTHASE [UDP-FORMING] 7-RELATED 105 777 - -
Vvi10g251 784 PANTHER ALPHA,ALPHA-TREHALOSE-PHOSPHATE SYNTHASE [UDP-FORMING] 7-RELATED 1 104 - -
Vvi10g251 784 TIGRFAM T6PP: trehalose-phosphatase 517 768 IPR003337 GO:0003824|GO:0005992
Vvi10g251 784 Pfam Trehalose-phosphatase 523 757 IPR003337 GO:0003824|GO:0005992
Vvi10g251 784 CDD GT20_TPS 59 473 IPR001830 GO:0003824|GO:0005992
Vvi10g251 784 Gene3D Glycogen Phosphorylase B; 249 458 - -
Vvi10g251 784 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 58 477 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi10g251 Vvi12g130 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g251 K16055 - vvi:100265140 1312.75