Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g256 ATGACCAAATCTTCAGAGTCTGAGAAACGAGATTCAGACAAATCGCCGTCTTTGGAGGCTTTCTTGGCGCCGGTGGATCTAAACGAGGTGGCTCTTGTACGGACACTGGCCACCATCTCCATGGAGCTTATATTTGCGTTTTCCGATAGGCCTTGGCCGTTTCAGCGCAAGAATTCGAGGTCCTTGATTCGGAAAATTGAGGTCTTTCTGGTGCTGTTAGAGTTCCTGAGGGATTGCAATTTGAGTCTGCCTTCGGCGGCGGTGCTTTGCTTCAAGGAGCTTTACCTGCTTCTGTATCGGTCGAAGATACTTCTCGATTATTGCTTGCAATCAAGTAAATTGTGGCTTCTGTTGCAGAACCAGTCGATTTCGGGGCATTTTCATGATCTTAATCAGGAAATTTCGACGCTGTTGGATGTATTTCCGATGGAGGAACTTGAATTGACTGAAGATATAAGGGAGCAGCTTGAGCTTTTGCAGAAACAGGTGAGGAGGGCGAAGTTGTTTCTTGATAAGAATGATGAGGGGTTGAGGCTGAGGTTGTATTCTTTTCTTGATGACTTTGGGAGTGGGCGGATTCCTGATCCAGTGGAGCTGCGGTTGTTTTTTGTGGATAGATTAGGGATTCGGGATGCGAAGAGTTGTAGGGCTGAAATTGAGTTTTTGGAGGAGCAGATTTATAGTCACGAGGGAGATGTTGAGCCGAATGAGAGCGAGGTAGAAATGAGTTTTGGGATTAAGAAGCCGAGGAAAGGGTTGATTACTCAAGAAATTGGGGATACCTTCATAACAGTCCCCAAGGACTTTTGTTGCCCCATATCTTTGGATGTGATGCGAGACCCAGTAATAATTTCAACAGGACAGACATATGATCGAACTTCAATATCAAGGTGGATGGAAGAAGGGCATTGTAGTTGCCCAAAGACAGGGCAGATGCTTGCTCACCCTCGCCTTGTTCCCAATCGAGCTCTCAGGAATTTGATCACACAATGGTGCACTGCTTATGGAATCACCTTGGATCCACCAGACAGCCCAGATACTGCCCGTGAGATACGTTTATTAGCAAAAACAGGGAAGGAAAACCGTGCGTATATAGCAGAAGCTGGGGCAATCCCCCATCTTCTCAAGCTACTCTCATCTCCAAATTCTGTCGCACAAGAGAATTCTGTAACGGCAATGCTTAACCTATCAATATATGACAAGAACAAAAGCCGAATTATGGATGAGGATGGAATAGCGGACGAGGGTGGGGCAGTTGAAGCCCTGGCAGGGCTGTTGAGAGAGGGAACCCCAAGAGGAAGGAAAGATGCTGTAACGGCTCTATTTAATCTATCAACCCACACAGATAATTGTGCCAGAATGGTAGCGTCAGGGGCTGTAACTGCATTAGTAGCGGCCTTGGGAACTGAGGGGGTTGCAGAGGAAGCAGCGGGAGCATTGGCCTTGATTGTTAGGCGGCCAATTGGGGCTGAAGCAGTAGGGAGGGAGGAAATGGCAGTGGCTGGGTTATTAGGAATGATGCGGTGTGGGACTCCAAGGGGGAAAGAGAATGCAGTTGCAGCATTGCTTGAACTGTGCAGAAGTGGCGGGACAGCTGCAACAGAAAGGGTCCTTAAGGCTCCAGCGCTGGCTGGTTTGCTTCAGACTCTGTTGTTTACAGGTACAAAGCGCGCTAGGAGAAAGGCTGCATCCCTTGCCAGAGTTTTCCAGAGGTGTGAGAATGCAGCCTTGCATTTTGGTGGACTTGGTGTAGGGTATGCATTTGCCAGAAACTCATCTGCAAATACCGATGCAAGCTTTTCTAGTGAGGTTTCCATGCAAATGCCCATTTCAGTGCCTTTTCATTTTCTGCTATATTTTGTAATGCCCAATTACTTGACAAATCAGAATGAGGAATTCTCTAAAAATGGTCAAGTTGGTAATAGTATAATGTGGAAAAGCTGCTTTTAG 1950 46.92 MTKSSESEKRDSDKSPSLEAFLAPVDLNEVALVRTLATISMELIFAFSDRPWPFQRKNSRSLIRKIEVFLVLLEFLRDCNLSLPSAAVLCFKELYLLLYRSKILLDYCLQSSKLWLLLQNQSISGHFHDLNQEISTLLDVFPMEELELTEDIREQLELLQKQVRRAKLFLDKNDEGLRLRLYSFLDDFGSGRIPDPVELRLFFVDRLGIRDAKSCRAEIEFLEEQIYSHEGDVEPNESEVEMSFGIKKPRKGLITQEIGDTFITVPKDFCCPISLDVMRDPVIISTGQTYDRTSISRWMEEGHCSCPKTGQMLAHPRLVPNRALRNLITQWCTAYGITLDPPDSPDTAREIRLLAKTGKENRAYIAEAGAIPHLLKLLSSPNSVAQENSVTAMLNLSIYDKNKSRIMDEDGIADEGGAVEALAGLLREGTPRGRKDAVTALFNLSTHTDNCARMVASGAVTALVAALGTEGVAEEAAGALALIVRRPIGAEAVGREEMAVAGLLGMMRCGTPRGKENAVAALLELCRSGGTAATERVLKAPALAGLLQTLLFTGTKRARRKAASLARVFQRCENAALHFGGLGVGYAFARNSSANTDASFSSEVSMQMPISVPFHFLLYFVMPNYLTNQNEEFSKNGQVGNSIMWKSCF* 650
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3196986 3199699 + Vvi10g256 Vvi10g256 770855
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g256 649 ProSiteProfiles U-box domain profile. 264 338 IPR003613 GO:0004842|GO:0016567
Vvi10g256 649 SUPERFAMILY RING/U-box 253 338 - -
Vvi10g256 649 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 417 459 IPR000225 GO:0005515
Vvi10g256 649 SMART arm_5 447 485 IPR000225 GO:0005515
Vvi10g256 649 SMART arm_5 404 446 IPR000225 GO:0005515
Vvi10g256 649 SMART arm_5 358 398 IPR000225 GO:0005515
Vvi10g256 649 Gene3D - 340 571 IPR011989 -
Vvi10g256 649 Pfam Armadillo/beta-catenin-like repeat 359 397 IPR000225 GO:0005515
Vvi10g256 649 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 17 11 347 - -
Vvi10g256 649 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 17 347 411 - -
Vvi10g256 649 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 17 412 597 - -
Vvi10g256 649 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 369 411 IPR000225 GO:0005515
Vvi10g256 649 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 264 338 IPR013083 -
Vvi10g256 649 Pfam U-box domain 265 332 IPR003613 GO:0004842|GO:0016567
Vvi10g256 649 PANTHER U BOX DOMAIN-CONTAINING 412 597 - -
Vvi10g256 649 PANTHER U BOX DOMAIN-CONTAINING 347 411 - -
Vvi10g256 649 PANTHER U BOX DOMAIN-CONTAINING 11 347 - -
Vvi10g256 649 CDD RING-Ubox_PUB 269 311 IPR045210 -
Vvi10g256 649 SUPERFAMILY ARM repeat 346 539 IPR016024 -
Vvi10g256 649 SMART Ubox_2 268 331 IPR003613 GO:0004842|GO:0016567
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g256 - - twl:120015034 811.216