Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g26 ATGTTTCAACCAAATATGTTCGACAGTCACCATCATCTACTAGATATGCCCCACAAAACCCCCGAAAGTGAAATGGGGAAAATACGAGACGAAGAATTCGAGAGCAAATCAGGAACAGAAAACATGGACGCCCCTTCTGGCGATGATCAAGATCCCAACCAGCGCCCCAAAAAGAAGCGGTACCATCGCCACACTCAGCATCAAATCCAGGAAATGGAAGCTTTCTTCAAGGAGTGCCCTCATCCAGATGATAAGCAAAGAAAGGAGTTGAGCCGTGAATTAGGGTTGGAGCCTTTACAAGTCAAATTTTGGTTCCAAAACAAGCGCACTCAAATGAAGGCCCAACATGAACGCCATGAGAACTCAAATCTGAGGGCTGAGAACGAAAAGCTCCGAGCTGAGAACATAAGGTACAAAGAAGCCCTCAGCAACGCGACATGTCCTCACTGCGGAGGCCCAGCTTCTATTGGCGAGATGTCATTTGATGAGCAGCATTTGAGGATCGAAAATGCTCGGCTCAGGGATGAGATTGATAGGATTTCTGGGATTGCAGCCAAGTATGTTGGGAAGCCCATGGTTTCATATCCTCATCTTTCTACCCACACATCATCCCGGTCCCTCGATCTTGGGGTTGGGAATTTTGGGGCGCAATCAGGCATAGTAGGGGACATGTACGGAGGTGGTGATCTCCTTAGATCAGTCTCGCTGCCTACTGAGGCAGATAAACCGATGATTGTTGAGCTTGCTGTTGCAGCAATGGAAGAACTAATCCGAATGGCCCAGGCTGGGGAACCCTTATGGATTCCCACCTCTGACAACTCTACTGAGATTCTAAGTGAAGATGAATACCTGAGGACTTTCCCCAGGGGAATTGGGCCAAAACCCTTGGGGTTAAAATCTGAAGCTTCCAGGGAAACTGCAGTGGTAATAATGAACCATATCAGCCTTGTTGAGATTCTCATGGATGTGAATCAATGGTCAAGTGTGTTTTCCGGTATTGTTTCAAGAGCAATGACCCTAGAAGTCCTCTCAACGGGAGTCGCAGGGAACTACAATGGAGCCTTGCAAGTGATGACGGCTGAATTCCAAGTCCCTTCACCGCTGGTTCCAACTAGAGAAAACTATTTTGTTAGGTACTGCAAGCATCATCCCGATGGGACTTGGGCAGTTGTTGATGTTTCATTGGATAACTTACGCTCTGGTCCAATAACAAGAAATCGAAGAAGACCATCTGGTTGTTTGATCCAAGAGTTACCCAATGGTTACTCCAAGGTCATATGGGTCGAACATGTAGAGGTGGATGATAGAGCTGTTCACAATATATACAGACCTCTAGTAAACTCAGGTCTTGCATTTGGAGCAAAGCGCTGGGTGGCTACCCTAGATCGCCAATGCGAACGTCTAGCAAGTGCCATGGCCAGCAACATTCCTGCAGGAGATGTTGGTGTGATAACAAGCCCAGAGGGAAGGAAAAGCATGTTGAAGCTGGCTGAGAGAATGGTGATGAGTTTTTGTGCCGGTGTTGGGGCTTCTACTACACACACATGGACAACACTATCAGGCAGCGGGGCTGATGATGTAAGGGTCATGACCAGAAAGAGTATGGATGATCCTGGCAGGCCTCCTGGTATTGTACTAAGTGCTGCGACTTCCTTCTGGATTCCAGTTCCACCGAAACGAGTATTTGATTTTCTTCGTGCTGAGAACTCCCGAAGTGAGTGGGACATCCTTTCAAATGGAGGACTAGTTCAAGAGATGGCACACATAGCTAATGGCCGGGATCCAGGCAACTGTGTCTCTCTACTTCGAGTGAATAGTGCAAATTCGAGCCAGAGCAACATGCTGATACTACAAGAGAGCTGCACTGATCCTACCGGCTCTTACGTGATCTACGCTCCAGTTGACATCGTTGCCATGAATGTGGTCTTAAGCGGTGGGGACCCAGATTATGTTGCCCTCTTGCCATCTGGTTTCGCAATACTTCCTGATGGAGCAGTCCTTCATGGAGGAGGAATTCTTGATGTTGGGTCTGGTGGCTCTCTATTGACGGTTGCATTTCAGATCTTAGTTGATTCAGCACCAACTGCAAAACTCTCTCTTGGATCAGTGGCAACTGTTAATAGCCTTATCAAGTGCACAGTTGAAAGGATCAAGGCAGCAGTATCATGTGAGAACACATGA 2181 47.5 MFQPNMFDSHHHLLDMPHKTPESEMGKIRDEEFESKSGTENMDAPSGDDQDPNQRPKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKAQHERHENSNLRAENEKLRAENIRYKEALSNATCPHCGGPASIGEMSFDEQHLRIENARLRDEIDRISGIAAKYVGKPMVSYPHLSTHTSSRSLDLGVGNFGAQSGIVGDMYGGGDLLRSVSLPTEADKPMIVELAVAAMEELIRMAQAGEPLWIPTSDNSTEILSEDEYLRTFPRGIGPKPLGLKSEASRETAVVIMNHISLVEILMDVNQWSSVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAEFQVPSPLVPTRENYFVRYCKHHPDGTWAVVDVSLDNLRSGPITRNRRRPSGCLIQELPNGYSKVIWVEHVEVDDRAVHNIYRPLVNSGLAFGAKRWVATLDRQCERLASAMASNIPAGDVGVITSPEGRKSMLKLAERMVMSFCAGVGASTTHTWTTLSGSGADDVRVMTRKSMDDPGRPPGIVLSAATSFWIPVPPKRVFDFLRAENSRSEWDILSNGGLVQEMAHIANGRDPGNCVSLLRVNSANSSQSNMLILQESCTDPTGSYVIYAPVDIVAMNVVLSGGDPDYVALLPSGFAILPDGAVLHGGGILDVGSGGSLLTVAFQILVDSAPTAKLSLGSVATVNSLIKCTVERIKAAVSCENT* 727
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 300628 304962 + Vvi10g26 Vvi10g26 770625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g26 726 MobiDBLite consensus disorder prediction 1 67 - -
Vvi10g26 726 Gene3D - 251 470 IPR023393 -
Vvi10g26 726 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 13 723 IPR042160 -
Vvi10g26 726 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN-RELATED 13 723 - -
Vvi10g26 726 SUPERFAMILY Bet v1-like 238 469 - -
Vvi10g26 726 CDD homeodomain 58 116 IPR001356 GO:0003677
Vvi10g26 726 ProSiteProfiles 'Homeobox' domain profile. 55 115 IPR001356 GO:0003677
Vvi10g26 726 ProSitePatterns 'Homeobox' domain signature. 90 113 IPR017970 GO:0000981|GO:0006355
Vvi10g26 726 Pfam Homeodomain 58 113 IPR001356 GO:0003677
Vvi10g26 726 Gene3D - 45 132 - -
Vvi10g26 726 SMART START_1 247 467 IPR002913 GO:0008289
Vvi10g26 726 SUPERFAMILY Homeodomain-like 43 115 IPR009057 -
Vvi10g26 726 SUPERFAMILY Bet v1-like 487 718 - -
Vvi10g26 726 Pfam START domain 248 467 IPR002913 GO:0008289
Vvi10g26 726 SMART HOX_1 56 119 IPR001356 GO:0003677
Vvi10g26 726 ProSiteProfiles START domain profile. 238 470 IPR002913 GO:0008289
Vvi10g26 726 Coils Coil 109 144 - -
Vvi10g26 726 CDD START_ArGLABRA2_like 242 466 - -
Vvi10g26 726 MobiDBLite consensus disorder prediction 11 38 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi10g26 Vvi12g521 ECH
Vvi10g26 Vvi19g464 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13660 PF01852 START 2.70E-56 CL0209 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g26 K09338 - vvi:100264009 1454.11