Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g265 ATGGGCGAGATATCAGGAGCCAATGGAAACCATGAGGTTTCCCTGAACATAAAAGACAGTGATGCCAATCATAATCCTCCACCCCCCTCCACCGCAACAAAACAAGGATCCACCTCCTCTTTCTCTTTTCCTTTCGTACAAAAGTTAATCGCAGAGGTGTTGGGCACGTACTTCTTGATATTCGCTGGCTGTGCTGCGGTGGTGGTGAATTCTGACAAGGATAGCGTAGTGACTTTGCCCGGAATATCCATAGTGTGGGGACTGGTTGTGATGGTAATGGTCTACTCCGTCGGCCACATCTCCGGTGCCCACTTCAACCCAGCTGTCACCATTGCTTTCGCTACTTGCAAGAGATTCCCATGGAAACAGGTTCCGGCCTATGTAGTGGCTCAAGTGATTGGATCAACGCTAGCAAGTGGAACCCTTCGACTGATTTTCAACGGGAAGCAAGACCACTTTCCTGGAACTCTTCCGGCAGGCTCGGACTTGCAGTCCTTTGTCATCGAGTTCATAATCACATTCTACCTCATGTTTGTCATCTCCGGCGTTGCCACCGACAATAGAGCTATTGGGGAACTTGCTGGGCTTGCCGTCGGAGCTACTGTGTTACTTAATGTGATGTTTGCAGGGCCAATTTCGGGTGCTTCGATGAATCCAGCAAGGAGTTTGGGGCCTGCAATTGTATCGAACACTTACAGGGGGATATGGATATATTTACTGGCACCGACTTGTGGCGCCATATCAGGAGCTTGGGTCTACAACATCATCAGGTTCACCGACAAGCCCCTTCGTGAGATCACCAAGAGTGGCTCCTTCCTGAAAAGCAAATCGTCCCGTAATGGGTCTTAA 849 49.71 MGEISGANGNHEVSLNIKDSDANHNPPPPSTATKQGSTSSFSFPFVQKLIAEVLGTYFLIFAGCAAVVVNSDKDSVVTLPGISIVWGLVVMVMVYSVGHISGAHFNPAVTIAFATCKRFPWKQVPAYVVAQVIGSTLASGTLRLIFNGKQDHFPGTLPAGSDLQSFVIEFIITFYLMFVISGVATDNRAIGELAGLAVGATVLLNVMFAGPISGASMNPARSLGPAIVSNTYRGIWIYLLAPTCGAISGAWVYNIIRFTDKPLREITKSGSFLKSKSSRNGS* 283
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3271260 3273334 + Vvi10g265 Vvi10g265 770864
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g265 282 PANTHER AQUAPORIN NIP2-1 1 276 IPR034294 -
Vvi10g265 282 ProSitePatterns MIP family signature. 104 112 IPR022357 -
Vvi10g265 282 PRINTS Major intrinsic protein family signature 47 66 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi10g265 282 PRINTS Major intrinsic protein family signature 86 110 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi10g265 282 PRINTS Major intrinsic protein family signature 123 142 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi10g265 282 PRINTS Major intrinsic protein family signature 168 186 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi10g265 282 PRINTS Major intrinsic protein family signature 199 221 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi10g265 282 PRINTS Major intrinsic protein family signature 236 256 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi10g265 282 MobiDBLite consensus disorder prediction 16 38 - -
Vvi10g265 282 CDD MIP 47 256 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi10g265 282 Gene3D Glycerol uptake facilitator protein. 5 267 IPR023271 -
Vvi10g265 282 SUPERFAMILY Aquaporin-like 41 266 IPR023271 -
Vvi10g265 282 PANTHER AQUAPORIN NIP1-1-RELATED 1 276 - -
Vvi10g265 282 TIGRFAM MIP: MIP family channel proteins 51 253 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi10g265 282 Pfam Major intrinsic protein 42 253 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g265 K09874 - vvi:100263543 550.436