Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g269 ATGTCACATACCGTTTCTTACTGTTTCTCTTGTTATCAATTGAATTACTTCATAAGGAATTTAAGTGTCACATTCTATCATTCTAATGGACTATTTTGGGACATAAGTAAGGAGGAAGAATCAAGAAAGATGTTCATCAATATAAATGAAACCACCATCATTATTGAGAAGTTACCACTTTCAATTTCTGCATGCAGTGATCTTTCTTACAATAACTTTACATGGCAAAGCCCTGAGCAACCTGCTTGTGACAATTACAATGGTGCAAAGTTAAATTTGTTTCAAGCCTTCTCAAAGGATAACAGCTTAAAAGGAGTTCTTCCATGCAGAACAGATCTCAAATGTAAAAATTATGGGCATTCTTTATATGTTAATTGTGGTGGAGAAAAGGTGAAAGTTAATGAAGACAAAAGAAGCATCACCTATGAAGGAGATACAGCAAGGGACAACAGTGATGCAAAATACTATTTAAGTGCTGATAACAACAACTGGGGATTTAGTAGCTCTGGAGACTTCATGGATGACAATAATGAACTAAATAAAGATTATATTATAACTTCAAAATCACAAATCTCTGAGACATTATACAACACAGCACGAATTTCTCCTCTCTCTCTCACTTATTTCAGATATTGTCTACAAAATGGGAGTTATAGTGTGCGTCTCCACTTTGCCGAGATAGAATTCACAAATGATAGTACATACGGAAGCCTTGGGAAACGCATGTTTGATATTTATGCCCAGGATGAATTGGTAAAGAAGGATTTCAATATTGAAGATCATGCCAAAGGGGCTCTTAAGCCATATACTTTACCATTTAATGCAACTGTGACAAATAATGTGCTAGAGATCCGCTTCTATTTTGCTGGCAGAGGAACAACTAGAATTCCTCAAAGAGGAGTCTATGGCCCCCTCATATCAGCTATCTCTGTGGATCCCAATTTCACACCCCCATCTGAAGGTGGAAAGACAAAGACTGCACCTATCATTATTGGAGTTGTAGCGGCATGTCTTATTTGCTTGGCACTGGGAATTTTTTGGTGGAGAGTCAACTTGAGAACCAAAAATGGGAGAGAAAAAGATTTTGGAGGATTAGATGTCCACATAGGATCCTTTACCTTAAAACAAATAAAAGCTGCCACCAACAATTTTGATTCTCTAAACCAGATTGGGGAAGGTGGATTTGGTCCTGTGTACAAGGGGCTATTACCTGATGGTACTGCGATTGCCGTGAAGCAGCTTTCATCTAAATCAACTCAGGGGAATCGTGAATTTTTGAATGAGATAGGCATGATTTCTTGTTTGCAGCACCCAAATCTTGTGAAACTTCATGGATGTTGTATCGAAGGGAACCAACTCTTGCTCGTATATGAATACATGGAAAATAATAGCCTTGCCCGTGCCTTGTTAGGCCCAGAAAACTGTCAACTGAAACTGGATTGGCCAACAAGGCAGAAGATTTGTGTTGGGATAGCCAGAGGTTTAGCTTTTCTCCATGAAGAATCAAGACTCAAGATTGTTCACAGAGATATCAAAGGTACAAATGTACTGCTTGATGGGGACCTAAATCCCAAAATTTCCGACTTTGGGCTGGCTAAACTTCATGAAGAGGAGAAAACCCACATCAGCACCCGAGTTGCTGGAACAATAGGGTACATGGCTCCAGAATATGCACTTTGGGGTTACCTAACCTATAAAGCAGATGTTTACAGTTTCGGAGTTGTGGCTTTGGAAATTGTTAGTGGGAAGCACAATATGAGTTATCAGCCCAAGAATGATTGTGCTTGTCTTCTAGACTGGGCCTGTTCTTTGCAGCAAAGTGGAGACATAATGGAGCTAGTGGATCAAAAGCTGGGATCTGAATTCAACAAGAAAGAGGCAGAAAGGATGATCAAAGTAGCTCTCTTATGCACTAATGCTTCCCCATCACTAAGGCCAAACATGTCTGAAGCGGTTAGCATGCTGGAAGGAATAACTACCATCCCAGATGCAATACCAGAAGCAGGTAGCTACAGTGAAGATTTGAGGTTTAAGGCTATAAGAGAATATCACAAGCATACAAGATCTAAGGTTTTGGAAATAAGTGAGGTCCAAGCTGACTCAACATCAGGCAGACAGGCTTGGATTCAATCTACCTCTGCGTCTGCCCATGATCTCTATGATATTAACATGGAGTCGTATTTGAGGTCTAGATCCACAAGGCAACATAATACAGAGATAGAAAGCCATCTTTCAGAAGGAACCCAGACTGAGATAACATCAAAACATCCATGGATTAGCTCTTCCTCTACATCTGGCCAGGATCTTTACAGTTTTAACCTGGAATCCCACTATTTCGATTTCCATAATAATGGTTTCTTATTCATATCCATATTTCTTATAAGTAATCCAAACACAATAATGGATGAAAGATTGAATGAATTTCTTATTCTTTATGCTCCATCATGGCAAAGGCGCTCTTATAGTTCTTCTATTCTTTACCATCTATGTCTCACATTGTATTTATATACACTTGAATAG 2520 39.05 MSHTVSYCFSCYQLNYFIRNLSVTFYHSNGLFWDISKEEESRKMFININETTIIIEKLPLSISACSDLSYNNFTWQSPEQPACDNYNGAKLNLFQAFSKDNSLKGVLPCRTDLKCKNYGHSLYVNCGGEKVKVNEDKRSITYEGDTARDNSDAKYYLSADNNNWGFSSSGDFMDDNNELNKDYIITSKSQISETLYNTARISPLSLTYFRYCLQNGSYSVRLHFAEIEFTNDSTYGSLGKRMFDIYAQDELVKKDFNIEDHAKGALKPYTLPFNATVTNNVLEIRFYFAGRGTTRIPQRGVYGPLISAISVDPNFTPPSEGGKTKTAPIIIGVVAACLICLALGIFWWRVNLRTKNGREKDFGGLDVHIGSFTLKQIKAATNNFDSLNQIGEGGFGPVYKGLLPDGTAIAVKQLSSKSTQGNREFLNEIGMISCLQHPNLVKLHGCCIEGNQLLLVYEYMENNSLARALLGPENCQLKLDWPTRQKICVGIARGLAFLHEESRLKIVHRDIKGTNVLLDGDLNPKISDFGLAKLHEEEKTHISTRVAGTIGYMAPEYALWGYLTYKADVYSFGVVALEIVSGKHNMSYQPKNDCACLLDWACSLQQSGDIMELVDQKLGSEFNKKEAERMIKVALLCTNASPSLRPNMSEAVSMLEGITTIPDAIPEAGSYSEDLRFKAIREYHKHTRSKVLEISEVQADSTSGRQAWIQSTSASAHDLYDINMESYLRSRSTRQHNTEIESHLSEGTQTEITSKHPWISSSSTSGQDLYSFNLESHYFDFHNNGFLFISIFLISNPNTIMDERLNEFLILYAPSWQRRSYSSSILYHLCLTLYLYTLE* 840
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3313423 3322980 + Vvi10g269 Vvi10g269 770868
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g269 839 Pfam Malectin domain 122 309 IPR021720 -
Vvi10g269 839 Gene3D Transferase(Phosphotransferase) domain 1 460 665 - -
Vvi10g269 839 ProSitePatterns Serine/Threonine protein kinases active-site signature. 506 518 IPR008271 GO:0004672|GO:0006468
Vvi10g269 839 SMART serkin_6 384 655 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g269 839 ProSiteProfiles Protein kinase domain profile. 384 658 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g269 839 Gene3D - 120 313 - -
Vvi10g269 839 Pfam Protein kinase domain 386 653 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g269 839 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 85 677 - -
Vvi10g269 839 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE RFK1-RELATED 85 677 - -
Vvi10g269 839 Gene3D Phosphorylase Kinase; domain 1 349 459 - -
Vvi10g269 839 SUPERFAMILY Protein kinase-like (PK-like) 367 667 IPR011009 -
Vvi10g269 839 CDD STKc_IRAK 390 658 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75975 PF00069 Pkinase 3.60E-47 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g269 - - vvi:100246406 1448.34