Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g270 ATGGTTGGATTCCACGTTGTTCCTTACTGGATTATTCTTGCACTCACTTCCTGCTGCGGTTTTGTTCACTCCAAGCTGCCCCAAAGCGAAGTGGATGCTCTTGCACGAATAGTTCGAACAATGGGAGCAACATATTGGAAGTTTGATGGAGATTCTTGCCAAATTGAAACAGTTGGGTTAACACCACAGCCACCGAGGGGATCCGAGCAAAACATTATTTGTAACAATTTCCTTGAGAAGAACAACACTGCCCTTCATGTTGTAAGCATTATGCTAAAGGGGTATAATCTTCCTGGTGTGCTTCCACCTGAGCTAGTCGAGCTGCAATACCTTCAAGAGATCGATTTTGCTTATAATTATCTTGGTGGTACAATACCACCTGAATGGGCTTCAGCACAATTGAGTTCAATCTCTGTACTTGCCAACCGATTATCAGGTGAAATTCCGAAGGAATTGGGAAACATTACCAGTCTCACATACCTGAACCTTGAAGCAAACCAATTTTCTGGCATTGTCCCTCCTGTGCTTGGGGACTTAATCAATTTGAAAACTTTGATCCTGTCTTCCAATCAGTTTTTTGGAAATTTGCCAACAACACTAGCTGGGCTAAGAAGCTTAACAGACTTTAGGATAAATGATAACAACCTTAGTGGACCTATACCCGAATTTATACAAAACTGGAAACAACTGACAAGAATAGAAATGCATGCAAGTGGACTGGAGGGACCCATTCCATCAAACATTTCCCTTTTGGATAAGTTAATTCAGTTGAGGATTAGTGATATAAATGGGACAACTCAAGCTTTTCCTATGCTGATCAAAATGACGGGCATAGTAAGATTGATTTTGAGGAACTGCAAGATTTCTGGAGAAATCCCCGCATACATCTGGAAAATGAAGTATCTGGAAATGTTGGATGTCAGTTTCAACAATTTGGTAGGTGAGATTCCAAATGACATAAGTTCAGCAAAGGCATTGAACTTCATCTATTTAAGCAGCAACTTGCTAAGTGGAAATGTGCCAGACTTATTCTTGAAGAAAGGAAGTAGTATTGATCTTTCCTACAATAACCTTTCATGGCAAGGCCCTGGGCAACCTACTTGTCAAGAGAACATGAATCTAAACCTTAACTTGTATCGGAGCTCTTCAATGGAGAACAACCTAAGGGCAGTTCTTCCATGCTCAAGGAATGTCAATTGTCCACGATATGTATGTTCCTTCTATATTAATTGTGGTGGAAATGATTTAACCATCAAAGAAAGGAGAGGAAAGGTTGTATATCAAGGAGATGCAAAAATTGAAGGTGGTGCTGCAAACTATTATACTAGTAACAGTTACTGGGGATTGAGTAGCTCTGGGGACTTCATGGATGATAACAATTTCCAAAACACACGTTATATTGAAACTCTGTCATCAGGGAACATCTCTGGAGTGTATACTACAGCTCGCCTTTCTCCTCTTTCACTTACTTATTTTGGTTATTGCTTAGAAAATGGGATTTACACCCTACAGCTGCACTTCACTGAGATATATTTCACAGATGACAAGACATATAATAGCCTTGGGAAACGCCTGTTTGACATTTATATTCAGGAAAAATTGGTTCATAAGAATTTCAACATTGAAGATGAGGCCCATGGAGCTCGAAATCCAGTTATGAAACAATTTAATGCCAGTGTGATAAATAATATCTTAGAGATTCGATTTTATTGGGCTGGCAAAGGGACAACAAGAATTCCTTACAGAGGAGTTTATGGCCCTCTCATATCAGCTATTTCTGTGTATCCCAATTTCAAATCTTGTTCAAGTAGTAGGAAAGAGGAAACAAATGCATATATTATTGGAGGAGTGGTAGGATTATTCATTATTTTCTTAATATTGGGTCTTCTTGCGTGGAAAGGTTGTTTGAGAGGCAAAAAAAAGGAAGAAAAAGGTATGGGCTATATTGTTTGCAAATGCTGCTTAGTATTGATTCATTGCATTTTCTGTCAAATATCTTCTATTGGCACAAGCGCATTATATTTAAGGTTAGGTTTACCACGATGCATGCTCTTTATGCATGGGATTAACTGGTATGGGTTCTCTATCTTAATCTGCAACACTCAAATCAATTTGGTGGATGCATTTTTTTTCCTTTTTGGGAAGGAGTTGAGAACTACCAAATATATTTGTTGTTATCTTACAGCCTATATTTCTATGTTTCCTTCCTGGATAGATCTCGAAGGACTAGATATGCAAACAGGTTCTTTTACCTTAAAACAAATAAAAGCTGCCACCAAAAATTTTGATTTTGCAAACAAGATTGGAGAAGGAGGTTTTGGTCCAGTTTATAAGGGTCTGTTATCCGATGGTACCATAGTTGCAGTGAAACAGCTTTCCTCTATATCAAGGCAAGGAAATCGTGAATTTTTGAATGAGATAGCCATGATTTCTTGTTTGCAACACCCAAATCTGGTGAAACTTCATGGATGTTGTGTTGAAGGAGATCAACTGTTACTGGTATATGAGTACATGGAAAACAATAGCCTAGCTGGCGCTCTGTTTGGTCCAGAAAATGGTCTGCCGAACCTGGACTGGCCAACTAGGCTTAAAATCTGTATTGGTATTGCCAAGGGATTAGCTTTTCTCCACGAAGAATCAAGGATTAAGATTGTCCACAGAGATATTAAAGCTACTAATGTGCTTCTTGATAGAGACCTAAACCCTAAAATATCTGACTTTGGACTGGCTAGGCTTGATGAAGGGGAGAAGAGCCATATTAGCACCAGGGTTGCTGGAACCATAGGATATATGGCACCAGAGTATGCACTGTGGGGTTATCTGACATACAAGGCAGATGTTTACAGTTTTGGGATTGTGGCTTTGGAAATTGTTAGTGGAAAACACAACAACAATTATATACCCAGCAATGGCTGCCTTTGTCTTTTAGATTGGGCCTGTCTGTTGCAGCAAAGCAGAAAGTTTCTGGAGCTGGTTGATGAGAAGTTGGGGTCTAAAGTCAATGAAGAAGAGGCAGAAAGGATGATTAAAGTGGCTCTCTTGTGCACAAATGCATCCCAATCACTTAGGCCTACCATGTCTGAAGTGGTAAGCATGCTTGAAGCCCGAATGCCTATTCCTGATATGATCCCAGGACCAAGTACCTACACCGAAGATTTGAGGTTCAAGGCAATGAGAGACTTTCGTCAAGACAAGAGAAACCAGAGTCTGAGTGAAGGTCGTCAATCCCTAAATTTAACAGGTCATACAGAGCTAGAGCTTTGCTCTACCTCTACATCTGGCCCTGAGTTCTATGAAATCAACCCACATTCGGAATCCTGTTAA 3324 39.8 MVGFHVVPYWIILALTSCCGFVHSKLPQSEVDALARIVRTMGATYWKFDGDSCQIETVGLTPQPPRGSEQNIICNNFLEKNNTALHVVSIMLKGYNLPGVLPPELVELQYLQEIDFAYNYLGGTIPPEWASAQLSSISVLANRLSGEIPKELGNITSLTYLNLEANQFSGIVPPVLGDLINLKTLILSSNQFFGNLPTTLAGLRSLTDFRINDNNLSGPIPEFIQNWKQLTRIEMHASGLEGPIPSNISLLDKLIQLRISDINGTTQAFPMLIKMTGIVRLILRNCKISGEIPAYIWKMKYLEMLDVSFNNLVGEIPNDISSAKALNFIYLSSNLLSGNVPDLFLKKGSSIDLSYNNLSWQGPGQPTCQENMNLNLNLYRSSSMENNLRAVLPCSRNVNCPRYVCSFYINCGGNDLTIKERRGKVVYQGDAKIEGGAANYYTSNSYWGLSSSGDFMDDNNFQNTRYIETLSSGNISGVYTTARLSPLSLTYFGYCLENGIYTLQLHFTEIYFTDDKTYNSLGKRLFDIYIQEKLVHKNFNIEDEAHGARNPVMKQFNASVINNILEIRFYWAGKGTTRIPYRGVYGPLISAISVYPNFKSCSSSRKEETNAYIIGGVVGLFIIFLILGLLAWKGCLRGKKKEEKGMGYIVCKCCLVLIHCIFCQISSIGTSALYLRLGLPRCMLFMHGINWYGFSILICNTQINLVDAFFFLFGKELRTTKYICCYLTAYISMFPSWIDLEGLDMQTGSFTLKQIKAATKNFDFANKIGEGGFGPVYKGLLSDGTIVAVKQLSSISRQGNREFLNEIAMISCLQHPNLVKLHGCCVEGDQLLLVYEYMENNSLAGALFGPENGLPNLDWPTRLKICIGIAKGLAFLHEESRIKIVHRDIKATNVLLDRDLNPKISDFGLARLDEGEKSHISTRVAGTIGYMAPEYALWGYLTYKADVYSFGIVALEIVSGKHNNNYIPSNGCLCLLDWACLLQQSRKFLELVDEKLGSKVNEEEAERMIKVALLCTNASQSLRPTMSEVVSMLEARMPIPDMIPGPSTYTEDLRFKAMRDFRQDKRNQSLSEGRQSLNLTGHTELELCSTSTSGPEFYEINPHSESC* 1108
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3340197 3390494 + Vvi10g270 Vvi10g270 770869
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g270 1107 PANTHER SERINE-THREONINE/TYROSINE-PROTEIN KINASE CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED 718 1086 - -
Vvi10g270 1107 PANTHER SERINE-THREONINE/TYROSINE-PROTEIN KINASE CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED 72 568 - -
Vvi10g270 1107 Pfam Protein tyrosine and serine/threonine kinase 764 1033 IPR001245 GO:0004672|GO:0006468
Vvi10g270 1107 Gene3D - 405 598 - -
Vvi10g270 1107 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 72 568 - -
Vvi10g270 1107 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 718 1086 - -
Vvi10g270 1107 Pfam Malectin domain 407 592 IPR021720 -
Vvi10g270 1107 Gene3D Ribonuclease Inhibitor 196 268 IPR032675 -
Vvi10g270 1107 Gene3D Ribonuclease Inhibitor 43 195 IPR032675 -
Vvi10g270 1107 Gene3D Ribonuclease Inhibitor 269 389 IPR032675 -
Vvi10g270 1107 ProSitePatterns Serine/Threonine protein kinases active-site signature. 884 896 IPR008271 GO:0004672|GO:0006468
Vvi10g270 1107 CDD STKc_IRAK 768 1034 - -
Vvi10g270 1107 SMART serkin_6 762 1033 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g270 1107 SUPERFAMILY L domain-like 84 346 - -
Vvi10g270 1107 Gene3D Phosphorylase Kinase; domain 1 737 837 - -
Vvi10g270 1107 Gene3D Transferase(Phosphotransferase) domain 1 838 1039 - -
Vvi10g270 1107 SUPERFAMILY Protein kinase-like (PK-like) 745 1035 IPR011009 -
Vvi10g270 1107 ProSiteProfiles Protein kinase domain profile. 762 1037 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi10g270 Vvi12g107 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75976 PF07714 PK_Tyr_Ser-Thr 5.90E-48 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g270 - - vvi:100266961 1278.46