Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g272 ATGTCAGTTTCAACAAGCTACGGCAACTTGCTAAGTGGAAATATACCGGACTTATTCTTGAAGAAAGGAAGTAGTATTGATCTATCTTACAATAACTTTTCATGGCAAGGCCCTGAGCAACCTGCTTGTCAAGAGAACATGAATTTGAATGTTAACTTGTATCGGAGCTCTTCAATGGAGAACAACCTAAGGGCTGTTCTTCCATGCTCAAAGAATGACAATTGTCCACAATATGCATGTTCTTTCCACGTTAATTGTGGTGGAGATGATTTAACCATCAAAGAAAGTAAAAGAAAAGTTTTCTATGAAGGAGATGCAGAAGTTGAAGGTGGTACTGCAAAATATTTTAGAAGTAAAAACAGTTACTGGGGATTGAGCAGCACCGGGGACTTCATGGATGATAACAATGACCAAAACATGCGTTATATTGAAACTCTCTCATCAGGGAACATATCTGGAGTGTATACTACAGCTCGCCTTTCCCCTCTTTCACTCACTTATTTTGGCTATTGCTTAGAAAATGGGGATTATACTTTACAGCTGCATTTTGCTGAGATATATTTCACAAATGACAAAACATATGATAGTCTTGGGAAACGCTTGTTTGACATTTATATTCAGGAGCAATTGGTGCATAAGGATTTTAATATTGAAGATGAGGCTCGTGGAGCACGAAAGCCAGTTATGAAACAATTTAACACAAGTGTAACAAATAATGTCTTAGAGATCCGATTTTATTGGGCTGGCAAAGGAACAACACGAATCCCTAGCAGAGGAGTTTATGGCCCTCTCATATCAGCTATTTCTGTGCATCCAAATTTTAAATCTTGTTCAAGTAGTGGAAAAAAGGGAATGACTGCTTATATCATTGGTGGAGTGGTAGGATTATGCATTATTCTATTAATATTGGGTTTCCTTCAGTGGAAAGGTTGTTTGAGAGGCAGAAAGAGGGAAGAAAAAGATCCCGAAGGTCTAGATTTGCAAACAAGTTCCTTTACCTTGAAGCAAATAAAAAATGCCACCAACAACTTTGATTCTGCAAACAAGATTGGAGAAGGTGGTTTTGGTCCGGTTTTTAAGGGTCTGTTATCTGATGGTACCACAGTTGCAGTGAAACAGCTTTCATCTGGATCAAGGCAAGGTAATCGTGAATTTTTGAATGAGATAGGCATGATTTCTTGTTTGCAACACCCAAATCTGGTGGAACTTCATGGGTGTTGTGTTGAAGGAGATCAATTGTTGCTGGTATATGAGTACATGGAAAACAATAGCCTAGCCCGTGCTTTGTTTGGTCCAGAAAATAGTCAGCTGATACTGGATTGGCCAACTAGGCTTAAAATCTGTATTGGGATTGCTAAAGGATTGGCTTTTCTCCATGAAGAATCGAGACTCAAGATTGTACATAGAGATATTAAAGCTACTAATGTGCTTCTTGATAGAGACCTAAACCCTAAAATATCCGACTTTGGATTGGCTAGGCTCGATGATGGAGGGAAGAGCCACATTAGCACCAGGATTGCTGGAACGATAGGATATATGGCACCAGAGTATGCACTAAGGGGTTATCTGACGTACAAGGCTGATGTTTACAGTTTTGGTATTGTGGTTCTGGAAATTGTCAGTGGAAAAAACAACGATTATATGCCAAGTAACAGTTGCTTTTGTCTTTTAGATTGGGCCTGTCATTTGCAACAAAGTGGAAAGCTTCTGGAGCTTGTTGATGAGGCGTTGGGGTCTGAAGTCCGTGAAGAAGAAGCAGAAATGATGGTGAAAATGGCTATCTTGTGCACAAATGCATCCCCATCACTTAGGCCTACTATGTCTGAAGTGGTGAGCATGCTTGAAGGAAGGAAGCCTACTCCTGATATAATCCTGGAACCAAATTCCCACAATGAGGATGTGAGGTTTAAAGCCATAAGAGACTTTCGTCAGGAGAAGCGAAACCAGAGTTTGACTGGAATCCAAACCCAGAATTCAACAGCTCCTACAGAGCTTTACTATTCCTCTGCATCTGGCGTTGATTTCTGTGAAATCAACCCTGCTTCAAAATCCTATCAAGCAAATTCAAGGAGAGAGATGGCCACAGTTGTTCATATTCCCCTGCTCATCTTGCTTCTACATACATGCTTTGGCTCAACAAGTGTTGAAGCACTAGCTGGACATCTTCCTGATGAAGAAAAGGGAGTTCTGGAAGAAATAGCTGAACAATTGGGCAAGAAGGATTGGAAATTTGAACTAAACCCTTGTGATGGGAACTCCAACTGGAACACACTAGGCTCGAGATCAAATCCATTCTATAACAATACAATCACCTGCAATTGCTCCTTCCCTAATGGTGAATGCCATGTTGATAGCATATCTCTCAAAGGGCAGGATCTTGCTGGTGTGCTTCCACCTGCCCTAGCGAAACTATCCTACCTCAAAAAAATTGATTTGGCTAGGAACTATCTCAGTGGTAACATACCCCCTGAATGGGAAACTACAAAGTTAGAAACTCTGTCCATTTCTATGAACCGATTATCAGGACGAATCCCAAACTTCTTGGGGAATATTACCACCCTTAAAAATTTGGGTCTTGAGGGCAACCTGTTTTCTGGAACTGTTCCCCCTGAGCTTGGCAAACTGGTCGACTTGCAGAAGCTCATTCTTAATTCTAACAATCTCACTGGACCATTGCCTCAAGCGCTTGCTCACCTAACTAATTTGAAAGAGCTTAGGATTAGCAGCAACAATTTCACTGGAAAAATACCCAGTTTCATTCAAAGTTGGAAGCAACTTCAGCAATTAGAGATCCAAGCTAGTGGTTTGGAAGGGCCCATACCTTCTAATATTTCAGTCTTGAGTAATTTAACTGAACTAAGAATTAGTGACTTAAATGGAGAGGGTTCCACTTTTCCACCCCTAAGAAGCATGAAAAGAATGTACAAGTTGATGTTGAGGGGCTGTAATATCTCAGGACCGATCCCCCCAGATATAGCAGAGATGACAGAATTGAGATTTTTGTAA 3006 40.65 MSVSTSYGNLLSGNIPDLFLKKGSSIDLSYNNFSWQGPEQPACQENMNLNVNLYRSSSMENNLRAVLPCSKNDNCPQYACSFHVNCGGDDLTIKESKRKVFYEGDAEVEGGTAKYFRSKNSYWGLSSTGDFMDDNNDQNMRYIETLSSGNISGVYTTARLSPLSLTYFGYCLENGDYTLQLHFAEIYFTNDKTYDSLGKRLFDIYIQEQLVHKDFNIEDEARGARKPVMKQFNTSVTNNVLEIRFYWAGKGTTRIPSRGVYGPLISAISVHPNFKSCSSSGKKGMTAYIIGGVVGLCIILLILGFLQWKGCLRGRKREEKDPEGLDLQTSSFTLKQIKNATNNFDSANKIGEGGFGPVFKGLLSDGTTVAVKQLSSGSRQGNREFLNEIGMISCLQHPNLVELHGCCVEGDQLLLVYEYMENNSLARALFGPENSQLILDWPTRLKICIGIAKGLAFLHEESRLKIVHRDIKATNVLLDRDLNPKISDFGLARLDDGGKSHISTRIAGTIGYMAPEYALRGYLTYKADVYSFGIVVLEIVSGKNNDYMPSNSCFCLLDWACHLQQSGKLLELVDEALGSEVREEEAEMMVKMAILCTNASPSLRPTMSEVVSMLEGRKPTPDIILEPNSHNEDVRFKAIRDFRQEKRNQSLTGIQTQNSTAPTELYYSSASGVDFCEINPASKSYQANSRREMATVVHIPLLILLLHTCFGSTSVEALAGHLPDEEKGVLEEIAEQLGKKDWKFELNPCDGNSNWNTLGSRSNPFYNNTITCNCSFPNGECHVDSISLKGQDLAGVLPPALAKLSYLKKIDLARNYLSGNIPPEWETTKLETLSISMNRLSGRIPNFLGNITTLKNLGLEGNLFSGTVPPELGKLVDLQKLILNSNNLTGPLPQALAHLTNLKELRISSNNFTGKIPSFIQSWKQLQQLEIQASGLEGPIPSNISVLSNLTELRISDLNGEGSTFPPLRSMKRMYKLMLRGCNISGPIPPDIAEMTELRFL* 1002
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3402600 3416864 + Vvi10g272 Vvi10g272 770871
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g272 1001 ProSitePatterns Serine/Threonine protein kinases active-site signature. 466 478 IPR008271 GO:0004672|GO:0006468
Vvi10g272 1001 PANTHER SERINE-THREONINE/TYROSINE-PROTEIN KINASE CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED 767 991 - -
Vvi10g272 1001 PANTHER SERINE-THREONINE/TYROSINE-PROTEIN KINASE CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED 51 663 - -
Vvi10g272 1001 SUPERFAMILY Protein kinase-like (PK-like) 327 617 IPR011009 -
Vvi10g272 1001 Pfam Protein tyrosine and serine/threonine kinase 347 614 IPR001245 GO:0004672|GO:0006468
Vvi10g272 1001 SMART serkin_6 344 614 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g272 1001 SUPERFAMILY L domain-like 763 1001 - -
Vvi10g272 1001 Gene3D Phosphorylase Kinase; domain 1 310 419 - -
Vvi10g272 1001 Pfam Malectin domain 82 268 IPR021720 -
Vvi10g272 1001 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 767 991 - -
Vvi10g272 1001 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 51 663 - -
Vvi10g272 1001 Gene3D Transferase(Phosphotransferase) domain 1 420 631 - -
Vvi10g272 1001 CDD STKc_IRAK 350 616 - -
Vvi10g272 1001 Gene3D Ribonuclease Inhibitor 726 892 IPR032675 -
Vvi10g272 1001 Gene3D Ribonuclease Inhibitor 893 1001 IPR032675 -
Vvi10g272 1001 Gene3D - 79 273 - -
Vvi10g272 1001 ProSiteProfiles Protein kinase domain profile. 344 623 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g272 1001 Pfam Leucine Rich Repeat 901 922 IPR001611 GO:0005515
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75977 PF07714 PK_Tyr_Ser-Thr 4.60E-48 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g272 - - vvi:100244640 1991.47