Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g273 ATGAACCACTCTGAGTTGTACACCAGAGCACGACTTTCTCCTCTGTCTTTTACTTACTATGGGCGCTGCTTAGCGGATGGGAACTATACAGTAAAAATTCACTTTGCAGAGATAATTATCAGAGGCAATAAATCCTTTCATAGCCTTGGCAGACGGATTTTTAATGTTTATATTCAGGGAAAGTTGGAATTGGAGGATTTTAATATTGTACAAGCAGCACAAGGGGTTGATAAGGTAGTTGTAAAAGAATTTAAAGCAGTTGTGAAGAATAAAACTTTAGAGATCCGCTTTCATTGGGCTGGCAAGGGAACAACAGCTATACCAAGCAGAGGAACTTATGGTCCTCTCATATCAGCTATTTCTGTGGAATCTGATTTCAAGCCTCCTTCTAATGGCAAAAAGAAGATACTCATTGCAGTTCTAGTTTCAGTATTGGTTTTCATTTTCACAATTTTGGGCCTTATTTGCTGGAAATGCTACTTTGGACAGAGAACATCAAGAGAACAAGAGTTGAGAGGATTAGATCTGCAAACTGGTTTATTTACCTTGAGACAAATTAAAGCTGCTACAAACAGCTTTGATGCTGCAAATAAGATTGGGGAAGGAGGTTTTGGATCTGTCTACAAGGGTACATTATTAGATGGAACCATAATTGCAGTGAAGCAACTTTCCACCAAGTCAAAGCAAGGAAGTCGTGAATTTGTGAATGAAATTGGAATGATTTCTGCTTTACAACACCCAAATCTTGTAAGATTATATGGATGTTGTGTTGAAGGAAATCAACTGATATTGGTATATGAATACATGGAGAACAATAGTCTCGCTCGGGCTTTATTTGGTAAAGTGGAATACCGATTAAATTTGGACTGGTCCACGAGGCAGAGGATTTGTGTTGGCATAGCAAGAGGTTTGGCTTTCCTGCATGAAGGATCAACACTGAAAATTGTTCATAGAGACATAAAAGCAAATAATATACTACTTGATACGAATCTTAACCCTAAGATCTCTGATTTTGGTCTGGCGAAACTTGATGAAGAAGATAACACCCATATTAGCACCAGAGTTGCTGGAACCATAGGATACATGGCACCAGAGTATGCATTATGGGGTTATTTAACCTATAAAGCCGACGTATACAGTTTTGGGGTTGTTGCTTTGGAACTTGTTGCAGGGAAGAACAACATGAAATATAGACCAAATGAGGATTACTTTTGTCTTCTAGATTGGGCTTTTGTTTTACAACAGAAAGGAAATTTAATGGAGCTAGTGGATCCAAACTTGGGGACTGAGTTCAAAAAGGAAGAGGCCATAAGGATGATTAAAGTTGCCCTATTATGCACCAATGCATCTCCCGCACTTAGACCTACCATGTCTGCAGTGGTGAGCATGCTCAAAGGTCAAACTGTCGTTCAGGAATACCCTCTGAATCCTAGTATTTATGGTGATGAATTTGGGTTTGAAGCCCTCAGAGGCCAGCATGATCAGACACAATTACAGAGCTCAAGTGAAATTGAGCCCCTCAATCATTCATCACGTACAGCACGGAGTGGATCTTCCTTTACATCTTCCCAAGATCCATAA 1581 39.53 MNHSELYTRARLSPLSFTYYGRCLADGNYTVKIHFAEIIIRGNKSFHSLGRRIFNVYIQGKLELEDFNIVQAAQGVDKVVVKEFKAVVKNKTLEIRFHWAGKGTTAIPSRGTYGPLISAISVESDFKPPSNGKKKILIAVLVSVLVFIFTILGLICWKCYFGQRTSREQELRGLDLQTGLFTLRQIKAATNSFDAANKIGEGGFGSVYKGTLLDGTIIAVKQLSTKSKQGSREFVNEIGMISALQHPNLVRLYGCCVEGNQLILVYEYMENNSLARALFGKVEYRLNLDWSTRQRICVGIARGLAFLHEGSTLKIVHRDIKANNILLDTNLNPKISDFGLAKLDEEDNTHISTRVAGTIGYMAPEYALWGYLTYKADVYSFGVVALELVAGKNNMKYRPNEDYFCLLDWAFVLQQKGNLMELVDPNLGTEFKKEEAIRMIKVALLCTNASPALRPTMSAVVSMLKGQTVVQEYPLNPSIYGDEFGFEALRGQHDQTQLQSSSEIEPLNHSSRTARSGSSFTSSQDP* 527
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3417143 3422443 + Vvi10g273 Vvi10g273 770872
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g273 526 Pfam Protein kinase domain 196 461 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g273 526 Gene3D Phosphorylase Kinase; domain 1 159 268 - -
Vvi10g273 526 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 1 501 - -
Vvi10g273 526 SUPERFAMILY Protein kinase-like (PK-like) 177 483 IPR011009 -
Vvi10g273 526 Pfam Malectin domain 3 120 IPR021720 -
Vvi10g273 526 SMART serkin_6 193 464 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g273 526 Gene3D Transferase(Phosphotransferase) domain 1 269 475 - -
Vvi10g273 526 PANTHER REPEAT TRANSMEMBRANE PROTEIN KINASE, PUTATIVE-RELATED 1 501 - -
Vvi10g273 526 ProSitePatterns Serine/Threonine protein kinases active-site signature. 315 327 IPR008271 GO:0004672|GO:0006468
Vvi10g273 526 CDD STKc_IRAK 199 466 - -
Vvi10g273 526 ProSiteProfiles Protein kinase domain profile. 193 470 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g273 526 Gene3D - 1 125 - -
Vvi10g273 526 MobiDBLite consensus disorder prediction 495 526 - -
Vvi10g273 526 ProSitePatterns Protein kinases ATP-binding region signature. 199 221 IPR017441 GO:0005524
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75978 PF00069 Pkinase 1.90E-48 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g273 - - vvi:100244640 1037.71