Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g274 ATGGCTACTTTTCCAGATATTCATGGGAAGACTCTCTTCTTTGCTTTTATTCTCACGCTGCTCATACTCATGTGCTTCGGTTCCAGCAGCGTTGAAGCCCAAGGTGGTCAGCTTCCTCGTGATGAAGAGGAGGCTCTAGAAGAAATAGCAGAACAAGTGGGGAAAAAGGATTGGAACTTCAGCCTAAACCCTTGTGATGGCAACTCCAACTGGTCCACACCTAACAGGAAGGAAAAGCCATTGTATAACAATACTCTCACCTGCAATTGCTCCTATCCCAACGGTCAATGCCACGTCGTTCAGATATTTCTCAAAGGGCAAGATCTTGCTGGTGTGCTTCCGCCCTCTCTGGCGAAACTGTCTTACCTTAAGATAATTGATTTCACTAGGAACTATCTTAGTGGTAACATACCGCATGAATGGGCTTCTGTGCAATTAGAATATATGTCACTTACTGTGAACAGGTTATCAGGACCAATACCAAGCTTCTTGGGAAACATTACTACTCTGAGATATATGAGTATGGAGAACAACATGTTCTCTGGAACTGTTCCTCCTCAGCTTGGGCAATTGGTCAACTTGGAAAATCTCATTCTTAACGCTAACAATCTCACTGGGGAGTTGCCTCCAGCACTTGCTAATCTAACCAAATTAACAGAATTTCGGATTAGTAGCAACAATTTCACTGGAAAAATACCCAATTTTATTCCTAGTTGGAAACAACTTCAGAAATTAGAGATCCAAGCAAGTGGTCTTGAAGGGCCCATACCTTCTAGCATTTCTGTCTTGAAGAATTTAACTGAATTAAGGATTAGTGATTTACCTGGGGAAGGCTCAAATTTTCCACCTCTAGGAAACATGAAAGGCCTGCAAAAGCTGATGTTGAGAGGCTGTAATATCTTCGGATCAATCCCCAAATATTTAGCAGAGATGACAGAACTGCAAATTTTAGACCTTAGCTTCAACAAGCTGGAAGGAATTGTTCTAAACCTGGAAGGTTTAACACAAATAGAATTCATGTATTTGACAAGCAACTATTTAACTGGGTCTATTCCGGACTGGATCGAGAGCAGAAATAATCGCTACCAAACAGATATTTCTTATAACAACTTTTCTAAAAGCTCTATGCCATCTTCTTGTCGAGAAACCCTGAACTTGTTCCGAAGCTTTTCTGAAAGGGGAAAATTAGAATTTGATGAGTGCCTGAACAGTTTTCCATGTCTCAAAGATCAGTATTCACTGCATATAAATTGTGGTGGAGGAAGAACCATCATTGGAGACATAGTCTATGAAGCGGATGAAGACTTAGCAGGTCCATCCAAGTTTGTCCCCACTAGAGATAATTGGGGTTTTAGTAGCACAGGAGACTTTTGGGATCGTGACAGAACCACAAAAAATTATATAGCACAGAATGTATCCATGCTCGGGATGAATGACTCTGAATTGTACACAAGAGCACGACTTTCTCCTCTATCTTTCACTTACTATGGACGCTGCTTAGCAGATGGGACCTATACTGTGAAACTTCATTTTGCAGAGATAGTGATCAGAGACAATAAATCCTTTCATAGTCTTGGAAGACGTATTTTTGATGTTTACATCCAGGAAAAGCTGGAGTTGCAAGATTTTAATATTGTACAAGCAGCACAAGGGGTTGATAAGGTAGTTGTAAGAGAATTTAAAGCAGTCGTAAGGAATAAGACTTTGGAGATCCGATTTCATTGGGCTGGGAAAGGTACAACAGCTGCCCCAGAGGGAGGAACCTATGGTCCTCTCATATCAGCCATTTCTGTAAAAGCTGAAAACACTCCCTTAAATTATGTGATGCAAAAATCAATACCTAAGGCAAGATTACATTGGTATTTGACAAGAGACCGAATCAATTTGCTGTCTTATTTTCTTGCCAGCTCATTTGCTTGTCTGGGAAATTTTGAGCCGTCTTCTGATGGAAAAAAGAAGATATTCATTGCAGTTGGGGCTGTGGCTTTCATGATATTCCTTATTTTAGGTATTCTTTGGTGGAAAGTTTGTTTTGGTGGCAGAATCTCCCGGGAACAAGATCTCGAAGGACTAGATATGCAAACAGGTTCTTTTACCTTAAAACAAATAAAAGCTGCCACCAAAAATTTTGATTTTGCAAACAAGATTGGAGAAGGAGGTTTTGGTCCAGTTTATAAGGGTCTGTTATCCGATGGTACCATAGTTGCAGTGAAACAGCTTTCCTCTATATCAAGGCAAGGAAATCGTGAATTTTTGAATGAGATAGCCATGATTTCTTGTTTGCAACACCCAAATCTGGTGAAACTTCATGGAAGTTGTGTTGAAGGAGATCAACTGCTACTGGTATACGAGTACATGGAAAACAATAGCCTAGCCGGCGCTCTGTTTGGTCCAGAAAATGGTCAGCCGAACCTGGACTGGCCAACTAGGCTTAAAATCTGTATTGGTATTGCCAAGGGATTAGCTTTTCTCCACGAAGAATCAAGGATTAAGATTGTCCACAGAGATATTAAAGCTACTAATGTGCTTCTTGATAGAGACCTAAACCCTAAAATATCTGACTTTGGACTGGCTAGGCTTGATGAAGGGGAGAAGAGCCATATTAGCACCAGGGTTGCTGGAACCATAGGATATATGGCACCAGAATATGCACTGTGGGGTTATCTGACATACAAGGCAGATGTTTACAGTTTTGGGATTGTGGCTTTGGAAATTGTTAGTGGAAAACACAACAACAATTATATACCCAGCAATGGCTGCCTTTGTCTTTTAGATTGGGCCTGTCTGTTGCAGCAAAGCAGAAAGTTTCTGGAGCTGGTTGATGAGAAGTTGGGGTCTAAAGTCGATGAAGAAGAGGCAGAAAGGATGATTAAAGTGGCTCTCTTGTGCACAAATGCATCCCAATCACTTAGGCCTACCATGTCTGAAGTGGTAAGCATGCTTGAAGCCCGAATGCCTATTCCTGATATGATCCCAGGACCAAGTACCTACACTGAAGATTTGAGGTTTAAGGCAATGAGAGACTTTCGAAAAAAAAATTCTTATCATTTTCTTTTCTTATATTTTTCCTTTCTATTTACTTTACTTCAAATTTTCCAACCGAACATTCTTAAATTACCTTCACGAAATTTTACAATTTTAAAAGGAATTTTTTTTTTTTTAAAAAAAAGAATTTCTATTTTAAAAATAAAAAATAAAAATTATCCTGAATTTTCGGTCAAAGTCCTGAAGGAAGAAATCAAATCATCATCATCTAGTTTTGGGATTGTGGCTTTGGAAATTGTTAGTGGAAAACACAACAACAATTATATACCCAGCAATGACTGCCTTTGTCTTTTAGATTGGGCCTGTCTGTTGCAGCAAGGCAGAAAGTTTCTGGAGCTGGTTGATGAGAATTGGGGTCTAACGTCAATGAAGAAGAGGCAGAAAGGGTGA 3435 39.85 MATFPDIHGKTLFFAFILTLLILMCFGSSSVEAQGGQLPRDEEEALEEIAEQVGKKDWNFSLNPCDGNSNWSTPNRKEKPLYNNTLTCNCSYPNGQCHVVQIFLKGQDLAGVLPPSLAKLSYLKIIDFTRNYLSGNIPHEWASVQLEYMSLTVNRLSGPIPSFLGNITTLRYMSMENNMFSGTVPPQLGQLVNLENLILNANNLTGELPPALANLTKLTEFRISSNNFTGKIPNFIPSWKQLQKLEIQASGLEGPIPSSISVLKNLTELRISDLPGEGSNFPPLGNMKGLQKLMLRGCNIFGSIPKYLAEMTELQILDLSFNKLEGIVLNLEGLTQIEFMYLTSNYLTGSIPDWIESRNNRYQTDISYNNFSKSSMPSSCRETLNLFRSFSERGKLEFDECLNSFPCLKDQYSLHINCGGGRTIIGDIVYEADEDLAGPSKFVPTRDNWGFSSTGDFWDRDRTTKNYIAQNVSMLGMNDSELYTRARLSPLSFTYYGRCLADGTYTVKLHFAEIVIRDNKSFHSLGRRIFDVYIQEKLELQDFNIVQAAQGVDKVVVREFKAVVRNKTLEIRFHWAGKGTTAAPEGGTYGPLISAISVKAENTPLNYVMQKSIPKARLHWYLTRDRINLLSYFLASSFACLGNFEPSSDGKKKIFIAVGAVAFMIFLILGILWWKVCFGGRISREQDLEGLDMQTGSFTLKQIKAATKNFDFANKIGEGGFGPVYKGLLSDGTIVAVKQLSSISRQGNREFLNEIAMISCLQHPNLVKLHGSCVEGDQLLLVYEYMENNSLAGALFGPENGQPNLDWPTRLKICIGIAKGLAFLHEESRIKIVHRDIKATNVLLDRDLNPKISDFGLARLDEGEKSHISTRVAGTIGYMAPEYALWGYLTYKADVYSFGIVALEIVSGKHNNNYIPSNGCLCLLDWACLLQQSRKFLELVDEKLGSKVDEEEAERMIKVALLCTNASQSLRPTMSEVVSMLEARMPIPDMIPGPSTYTEDLRFKAMRDFRKKNSYHFLFLYFSFLFTLLQIFQPNILKLPSRNFTILKGIFFFLKKRISILKIKNKNYPEFSVKVLKEEIKSSSSSFGIVALEIVSGKHNNNYIPSNDCLCLLDWACLLQQGRKFLELVDENWGLTSMKKRQKG* 1145
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3439035 3462765 + Vvi10g274 Vvi10g274 770873
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g274 1144 ProSiteProfiles Leucine-rich repeat profile. 313 335 IPR001611 GO:0005515
Vvi10g274 1144 PANTHER REPEAT TRANSMEMBRANE PROTEIN KINASE, PUTATIVE-RELATED 69 555 - -
Vvi10g274 1144 Gene3D Transferase(Phosphotransferase) domain 1 786 987 - -
Vvi10g274 1144 Gene3D Ribonuclease Inhibitor 40 201 IPR032675 -
Vvi10g274 1144 ProSitePatterns Serine/Threonine protein kinases active-site signature. 832 844 IPR008271 GO:0004672|GO:0006468
Vvi10g274 1144 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 666 983 - -
Vvi10g274 1144 SUPERFAMILY Protein kinase-like (PK-like) 694 983 IPR011009 -
Vvi10g274 1144 ProSiteProfiles Protein kinase domain profile. 710 985 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g274 1144 Pfam Protein tyrosine and serine/threonine kinase 712 981 IPR001245 GO:0004672|GO:0006468
Vvi10g274 1144 PANTHER REPEAT TRANSMEMBRANE PROTEIN KINASE, PUTATIVE-RELATED 666 983 - -
Vvi10g274 1144 PANTHER REPEAT TRANSMEMBRANE PROTEIN KINASE, PUTATIVE-RELATED 1086 1136 - -
Vvi10g274 1144 Gene3D Ribonuclease Inhibitor 202 276 IPR032675 -
Vvi10g274 1144 SMART serkin_6 710 981 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g274 1144 Gene3D Ribonuclease Inhibitor 277 395 IPR032675 -
Vvi10g274 1144 SUPERFAMILY L domain-like 82 352 - -
Vvi10g274 1144 Pfam Malectin domain 413 596 IPR021720 -
Vvi10g274 1144 Gene3D Phosphorylase Kinase; domain 1 680 785 - -
Vvi10g274 1144 CDD STKc_IRAK 716 982 - -
Vvi10g274 1144 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 1086 1136 - -
Vvi10g274 1144 Gene3D - 407 602 - -
Vvi10g274 1144 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 69 555 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi10g274 Vvi19g48 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75979 PF07714 PK_Tyr_Ser-Thr 1.20E-47 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g274 - - vvi:104880495 1910.58