Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g276 ATGGCTACTTTTCCAGATATTCAGAAGCCTCTCTTCTTCGCTTTCATTCTCATATGGCTCATACTGATGTGCTTTGGCTCCAAAGCCCAAGGTGGTCGGCTTCCTGACGATGAAGTGGAGGCTCTCCATGAAATAGCAGAACAAGTGGGGAAAAAAGATTGGGACTTCAGCCTAAACCCTTGTGATGGCAACGCCAACTGGTCAACACCTAAAAGGAAGGAAATGCCCTTGTATAACAATACTCTCACCTGCAATTGCTCCTATCCCAACGGTCAATGCCACGTCGTTCAGATATTTCTCAAAGGGCAGGATCTTGCTGGTGTGCTTCCCCCCTCTCTGGAAAAACTGCCTTACCTTAAGATGATTGATTTCACTAGGAACTATCTTAGTGGTAACATACCGCATGAATGGGCTTCTATGCAATTAGAATATCTGTCACTTACTGTGAACAGATTATCGGGACCAATACCTAGCTTCTTGGGAAATATTACTACTCTGAGATATATGAGTTTGGAGAGCAACCTATTCTCTGGAACTGTTCCTCACCAGCTTTGGCAACTAGTCAACCTGGAAAATCTCATTCTTAACACTAACAATCTCACTGGGGAGTTGCCTCCAACACTTGCTAATCTAACCAAATTAACAGAATTTCGGATTAGTAGCAACAATTTCACTGGAAAAATACCCAATTTTATTCATAGTTGGAAACAACTTCAGAAATTAGAGATCCAAGCAAGTGGTCTTGAAGGGCCCATACCTTTTAGCATTTCTGTCTTGAAGAATTTAACTGAATTAAGGATTAGTGATTTACCTGGGGAAGGCTCAAATTTTCCATCTCTAGGAAACATGACAGGCATGAAAAGGCTGATGTTGAAAGGCTGTAATATCTTCGGATCAATCCCCAAAGATTTAGCAAAGATGACAGAACTGCAAATTTTAGACCTTAGCTTCAACAAGCTGGAAGGAACTGTTCCAAACCTGGAAGATTTAACAAAAATGGAGCTCATGTATTTGACAAGCAACTTGCTTAATGGGCCTATTCCGGACTGGATCAAGAGCAGAGATAATCGCTACCAAATTGATATTTCTTATAATAACTTTTCTGAGCCCTCTGTGCCATCTACTTGTGGAGAAAGCTTGAACTTGTTCCGAAGCTTTTCTGAGAGGGGAAAATTAGAACTTGGTAAGTGCCTGAATAGTTTTCCATGTTCCAAAGATCGGTATTCACTGCATATAAATTGTGGTGGAGAAGGAACCACCATTGGAGACGTAGTCTATGAAGCGGATGACGATTTAGCAGGTCCATCCGAGTTTAACCCCATCAGAGATAATTGGGGTTTTAGTAGCACAGGACACTTTTGGGATCAAAACAGAACCTCAAAGGATTATATAGCACAGAATGTATCCATGCTCAGGATGAATGACTCTGAATTGTACAAAAGAGCACGACTTTCTCCTCTGTCTTTCACTTACTATGGACGCTGCTTAGCAGATGGGAACTATACTGTGAAACTTCATTTTGCAGAGATAGTGATAAGAGACAATAAATCCTTTCACAGTCTTGGAAGACGTATTTTTGATGTTTACATCCAGGAAAAGCTGGAGTTGAAAGATTTTAACATTGTACAAGCAGCACAAGGGGTTGATAAGGCATTTGTAAAAGAATTTAAAGCAGTTGTAAAGAACAAAACTTTAGAGATCCGATTTCATTGGGCTGGGAAAGGTACAACTGCTGCCCCAAAGAGAGGAACTTATGGTCCTCTCATATCAGCCATTTCTGTAAAAGCTGATTTTGAGCCTCCTTCTGATGTAAAAAAGAAGATATTCATTGTGGTTGGGGCTGTGGCTGTGGCTTTGGTATTATTCCTTGTTTTTGGTATTCTTTGGTGGAAAGTTTGTTTTGGAGGCAGAATCTCCCGGGAACAAGAATTGAGAGGATTAGATCTGCAAACTGGTTTATTTACCTTGAGACAAATTAAAGCTGCTACCAACAACTTTGATGCTGCAAACAAGATTGGAGAAGGAGGTTTTGGATCAGTCTACAAGGGTACACTATTAGATGGAACCATAATTGCAGTGAAGCAACTTTCTTCGAAATCAAGTCAAGGAAATCGTGAATTTGTAAATGAAATAGGAATGATATCCGGTTTACAACATCCGAATCTTGTAAGATTATATGGATGTTGCATTGAAGGGAATCAACTGCTGTTGGTATATGAATACATGGAGAACAATTGCCTTGCCCGTGCTTTATTTGGTGGAGGAGAAATCCAATTGCAATTAGATTGGCCTACCAGGCAAAGGATTTGTATTGGCATAGCAAAAGGTTTGGCTTTCCTGCATGAGGAATCGACACTGAAAATTGTTCATAGAGACATCAAGGCAACCAATGTACTTCTGGATAGGGAGCTTAACCCCAAGATCTCTGACTTTGGTCTGGCCAAGCTTGATGAAGAAGGAAACACCCACATTAGCACTAGAATTGCTGGAACTATAGGATACATGGCACCCGAGTATGCATTATGGGGTTATTTAACCTATAAAGCAGATGTATACAGTTTTGGAGTTGTTGCTTTGGAAATTGTTGCTGGGAAGAACAACATGAAATATAAGCCAAATGAAGATTATGTGTGTCTTCTGGACTGGGCATTTGTTTTACAACAAAAAGGAAATTTAATGGAGCTTGTGGATCCAAAGTTAGGGGCTGATCTCAACAAGGAAGAGGCAAAAATAATGATTAAAGTAGCTTTACTTTGCACCAATCCATCCCCGGCACTCAGGCCTACCATGTCTGCTGTAGTGAGCATGCTGAAAGGACAAACTGTTGTTCCAGAAGTACTGATCATGGATCCGAGTTCTTATAGTGATCACTTGAAGTTCAATGCTCTCAGAGGTCAGTATGATCAGATGCAACTTGAGAGCCATAGTGTCAGTGGGCCACTCAACAAGTCATTGGATTCAACAACGAAGGGATCTTCCTCCACATCTTCTCAGGATCTATATCAAATCAATCTTGACTCGCATTAA 3027 40.67 MATFPDIQKPLFFAFILIWLILMCFGSKAQGGRLPDDEVEALHEIAEQVGKKDWDFSLNPCDGNANWSTPKRKEMPLYNNTLTCNCSYPNGQCHVVQIFLKGQDLAGVLPPSLEKLPYLKMIDFTRNYLSGNIPHEWASMQLEYLSLTVNRLSGPIPSFLGNITTLRYMSLESNLFSGTVPHQLWQLVNLENLILNTNNLTGELPPTLANLTKLTEFRISSNNFTGKIPNFIHSWKQLQKLEIQASGLEGPIPFSISVLKNLTELRISDLPGEGSNFPSLGNMTGMKRLMLKGCNIFGSIPKDLAKMTELQILDLSFNKLEGTVPNLEDLTKMELMYLTSNLLNGPIPDWIKSRDNRYQIDISYNNFSEPSVPSTCGESLNLFRSFSERGKLELGKCLNSFPCSKDRYSLHINCGGEGTTIGDVVYEADDDLAGPSEFNPIRDNWGFSSTGHFWDQNRTSKDYIAQNVSMLRMNDSELYKRARLSPLSFTYYGRCLADGNYTVKLHFAEIVIRDNKSFHSLGRRIFDVYIQEKLELKDFNIVQAAQGVDKAFVKEFKAVVKNKTLEIRFHWAGKGTTAAPKRGTYGPLISAISVKADFEPPSDVKKKIFIVVGAVAVALVLFLVFGILWWKVCFGGRISREQELRGLDLQTGLFTLRQIKAATNNFDAANKIGEGGFGSVYKGTLLDGTIIAVKQLSSKSSQGNREFVNEIGMISGLQHPNLVRLYGCCIEGNQLLLVYEYMENNCLARALFGGGEIQLQLDWPTRQRICIGIAKGLAFLHEESTLKIVHRDIKATNVLLDRELNPKISDFGLAKLDEEGNTHISTRIAGTIGYMAPEYALWGYLTYKADVYSFGVVALEIVAGKNNMKYKPNEDYVCLLDWAFVLQQKGNLMELVDPKLGADLNKEEAKIMIKVALLCTNPSPALRPTMSAVVSMLKGQTVVPEVLIMDPSSYSDHLKFNALRGQYDQMQLESHSVSGPLNKSLDSTTKGSSSTSSQDLYQINLDSH* 1009
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3527407 3540220 + Vvi10g276 Vvi10g276 770875
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g276 1008 Gene3D Ribonuclease Inhibitor 273 388 IPR032675 -
Vvi10g276 1008 Gene3D Phosphorylase Kinase; domain 1 637 741 - -
Vvi10g276 1008 MobiDBLite consensus disorder prediction 975 1008 - -
Vvi10g276 1008 SUPERFAMILY Protein kinase-like (PK-like) 650 938 IPR011009 -
Vvi10g276 1008 PANTHER REPEAT TRANSMEMBRANE PROTEIN KINASE, PUTATIVE-RELATED 65 981 - -
Vvi10g276 1008 Gene3D Ribonuclease Inhibitor 35 272 IPR032675 -
Vvi10g276 1008 SUPERFAMILY L domain-like 85 368 - -
Vvi10g276 1008 ProSitePatterns Serine/Threonine protein kinases active-site signature. 788 800 IPR008271 GO:0004672|GO:0006468
Vvi10g276 1008 Pfam Protein tyrosine and serine/threonine kinase 669 937 IPR001245 GO:0004672|GO:0006468
Vvi10g276 1008 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 65 981 - -
Vvi10g276 1008 SMART serkin_6 666 937 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g276 1008 Gene3D Transferase(Phosphotransferase) domain 1 742 947 - -
Vvi10g276 1008 ProSiteProfiles Protein kinase domain profile. 666 943 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g276 1008 CDD STKc_IRAK 672 939 - -
Vvi10g276 1008 ProSiteProfiles Leucine-rich repeat profile. 309 331 IPR001611 GO:0005515
Vvi10g276 1008 Gene3D - 404 597 - -
Vvi10g276 1008 ProSitePatterns Protein kinases ATP-binding region signature. 672 694 IPR017441 GO:0005524
Vvi10g276 1008 Pfam Malectin domain 409 592 IPR021720 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi10g276 Vvi19g72 ECH
Vvi10g276 Vvi19g43 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75981 PF07714 PK_Tyr_Ser-Thr 1.80E-45 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g276 - - vvi:100241193 1971.05