Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g278 ATGCTTAATCTAAACATCCTCAGGTTCTTCTTCAACAAGTGCCTTCTTCTTCTTCTTCTCTCTGTCGCTGTGTTGAGTTGCTTTAGGCCAGCAACAGGTGCTCAGCTGCCTGCCTATGAATTGGATGCTCTTAGTGAAATTGCTTCACAATTGGGAAAAAAGGATTGGAATTTCAGTCTCAACCCTTGTGATGGGAACTCCAACTGGTCAACACCAATAATAACAGAGAAGCCATTATATGGCAATAATGTCAGCTGCAATTGCTCCTATCCTAATGGTGAATGCCACGTGGTTAACATAACTCTCAAAGGGCAGGATCTTGCTGGTGTCCTTCCACCATCCCTGGTGAAACTACCTTACCTTGAGATGATTGATCTGACTAGGAACTACCTTAGTGGTGACATACCTCCTCAATGGGCTTCTACAAAGTTAGAAATTCTATCCATTTCTATGAACCGATTCTCAGGCCCAATCCCAAAATTCTTTGGGAACATTACCACTCTTAAGTACTTGGGTTTTGAGGGCAATTTTTTTTCTGGAACTGTACCTCCCGAGCTTGGGAAACTGGTCAACTTGGAGCATCTCATTCTTAATTCTAACAATCTCACTGGAGAGTTGCCTCCAACCCTTGCTAACCTGACTAATTTAAAAGAACTTAGGATTAGCAGCAACAATTTCACAGGAAAAATACCTAGTTTCATTCAAAATTGGAAGCAACTTCAGTACTTGGAAATCCAGGCCAGTGGTTTTGAAGGCCCCATACCTTCTAGTATTTCTGCCTTGACTGATTTAATTGAACTAAGGATCAGTGACTTGACTGGAGAGGGATCCAAATTTCCACCAATAAGAAACATGAAAAGCTTGGATAAGTTGATGTTGAGGAGCTGTAATATCTCTGGACCCATCCGAACATATCTAGCAGATATGACAGAATTGAGATTTCTAGACCTCAGCTTCAACAAGTTGGAAGGACAAATTCCAAATCTTGACAGTCTAACAAATGTTGAAGCCATGTGTCTGACAGGCAACTTGCTTAATGGAAATATTCCAGACGGGATCAAGAGCAGAGAAAGTCGCTCCCAAATAGATCTTTCTTACAATAACTTCTCTGAGAAATCTGCACCACCTGCTTGTCGAGATAGCTTGAACTTGTTTAGAAGCTTTTCTGGGGGGAAAAACTTATGTGAGGTAAATGCCTCAATTTTTTTATTCTGGATACTTAGGGCCTTTTTCTTTGATTTGCAACTATGCAATGATGATGATCGATATTCATTGCATATAAATTGTGGGGGAGCGGAAACAACCATCGGAAACATTGTTTATCAAGGGGATCAATATGAAGGAGGTGCTGCAAAGTTTCATCCCATGAGTGATAATTGGGGGTTTAGTAGCACTGGACACTTCTGGGACCATAGCATCTCCATAAACGATTATATAGCACAAAATGTATCTGTACTCAGAATGAACAACTCTGGGTTATACACCAGAGCACGCCTTTCTCCTCTATCTCTCACTTATTATGGACGCTGCTTAGCGAATGGGAACTATACAGTGAAGCTTCACTTTGCAGAAATAATTTTTAGAAGCAATAGATCTTTCTATAGTCTGGGAAGACGGATTTTTGATGTTTATATACAGGACAAGCTGGAATTGAAGGATTTTGATATTGAACATGCAGCAAGAGGAGTCGATAAGACAATTGTAAAAGAATTTAAAGCAGTTGTTAGAAATAAAACTTTAGAAATCCGTTTTTATTGGGCTGGGAAGGGGACAACAGCTTTGCCATCAAGAGGAACTTATGGTCCTCTCATATCAGCTATTTCTGTAGAATCCGACTTCAAGCCTCCTTCTCATGGCAACATGAAGACACTCATTGGAGCTCTAGGTTTGCTGTTGATCCTCATTTTCACAGTTTTAGGCATTATTTGGTGGAAATGCTACTTCAAAGGAAAATCCCCAATCGAAGAGTTGAGAGGATTAGATCTGCAGACTGGCTTTTTTACTTTGCGACAAATTAAAGCTGCTACTAACAACTTTGATGCTGCAAACAAGCTTGGGGAAGGAGGTTTTGGATCTGTATATAAGGGTACATTGTTAGATGGTACCATAATTGCAGTGAAGCAACTTTCTTCCAAATCGAAGCAAGGAAATCGTGAATTTGTGAATGAGATAGGAATGATATCTGGTTTACAACACCCGAATCTTGTGAGATTATATGGATGCTGTATTGAAGCAAATCAACTATTGTTGGTATATGAATACATGGAGAACAATAGCCTTGCCCGTGCTTTATTTGGTAGAGAGGAATTCCAATTGAAATTGGACTGGCCCACCAGACAGAGGATTTGTGTTGGCATAGCAAAAGGTTTGGCTTTCCTGCACGAGGAATCAGCATTGAAAATTGTTCATAGGGACATCAAAACAAACAATATACTTCTCGATAGGGACCTTAACCCTAAGATATCTGACTTTGGTTTGGCCAAGCTTGATGAAGAAGAGAACACCCACATTAGCACCAGAGTTGCTGGAACTATAGGATATATGGCACCAGAGTATGCGCTCTGGGGTTATTTAACCTATAAAGCAGATGTTTACAGCTTTGGAGTCGTTGCATTGGAAATTGTTGCTGGGAAGAACAACATGAAATATAGACCAAACGAGGACTATTTTTCTCTTTTAGATTGGGCCTTTTTTCTACAACAAAAAGGAAATCTGATGGAGTTGGTGGATCCAAAGTTGGAGTCTGATTTCAACAAGGAAGAGGTCTTAAGAATGATTAAAATATCTCTATTATGCACCAATCCATCCCCGGCACTTAGGCCTACCATGTCTGCAGTGGTGAATATGCTTGAAGGTCGGGCTCCTGTTCAGGAATTCCCCTTGAATCCAATTATTTTTGGTGATGAAGCCCTCAGAAGCCAGTATAGTCAGATGCATTTCCACAGATCAAGTGAAACTGAGACCATCAAGCATTCATCTGATTCAACAGGCATTGGATCTCCCTCTACATCAACGCGTGATCTCCATCAAATCAATCCTGACTCATTAATGTAG 3054 40.44 MLNLNILRFFFNKCLLLLLLSVAVLSCFRPATGAQLPAYELDALSEIASQLGKKDWNFSLNPCDGNSNWSTPIITEKPLYGNNVSCNCSYPNGECHVVNITLKGQDLAGVLPPSLVKLPYLEMIDLTRNYLSGDIPPQWASTKLEILSISMNRFSGPIPKFFGNITTLKYLGFEGNFFSGTVPPELGKLVNLEHLILNSNNLTGELPPTLANLTNLKELRISSNNFTGKIPSFIQNWKQLQYLEIQASGFEGPIPSSISALTDLIELRISDLTGEGSKFPPIRNMKSLDKLMLRSCNISGPIRTYLADMTELRFLDLSFNKLEGQIPNLDSLTNVEAMCLTGNLLNGNIPDGIKSRESRSQIDLSYNNFSEKSAPPACRDSLNLFRSFSGGKNLCEVNASIFLFWILRAFFFDLQLCNDDDRYSLHINCGGAETTIGNIVYQGDQYEGGAAKFHPMSDNWGFSSTGHFWDHSISINDYIAQNVSVLRMNNSGLYTRARLSPLSLTYYGRCLANGNYTVKLHFAEIIFRSNRSFYSLGRRIFDVYIQDKLELKDFDIEHAARGVDKTIVKEFKAVVRNKTLEIRFYWAGKGTTALPSRGTYGPLISAISVESDFKPPSHGNMKTLIGALGLLLILIFTVLGIIWWKCYFKGKSPIEELRGLDLQTGFFTLRQIKAATNNFDAANKLGEGGFGSVYKGTLLDGTIIAVKQLSSKSKQGNREFVNEIGMISGLQHPNLVRLYGCCIEANQLLLVYEYMENNSLARALFGREEFQLKLDWPTRQRICVGIAKGLAFLHEESALKIVHRDIKTNNILLDRDLNPKISDFGLAKLDEEENTHISTRVAGTIGYMAPEYALWGYLTYKADVYSFGVVALEIVAGKNNMKYRPNEDYFSLLDWAFFLQQKGNLMELVDPKLESDFNKEEVLRMIKISLLCTNPSPALRPTMSAVVNMLEGRAPVQEFPLNPIIFGDEALRSQYSQMHFHRSSETETIKHSSDSTGIGSPSTSTRDLHQINPDSLM* 1018
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3556245 3578182 + Vvi10g278 Vvi10g278 770877
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g278 1017 Pfam Protein kinase domain 682 948 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g278 1017 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 70 993 - -
Vvi10g278 1017 Pfam Malectin domain 424 607 IPR021720 -
Vvi10g278 1017 MobiDBLite consensus disorder prediction 982 1017 - -
Vvi10g278 1017 ProSiteProfiles Protein kinase domain profile. 679 965 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g278 1017 Gene3D Transferase(Phosphotransferase) domain 1 755 959 - -
Vvi10g278 1017 SMART serkin_6 679 950 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g278 1017 ProSitePatterns Protein kinases ATP-binding region signature. 685 707 IPR017441 GO:0005524
Vvi10g278 1017 Gene3D Ribonuclease Inhibitor 271 399 IPR032675 -
Vvi10g278 1017 SUPERFAMILY Protein kinase-like (PK-like) 663 975 IPR011009 -
Vvi10g278 1017 Gene3D Phosphorylase Kinase; domain 1 650 754 - -
Vvi10g278 1017 CDD STKc_IRAK 685 952 - -
Vvi10g278 1017 Gene3D Ribonuclease Inhibitor 208 270 IPR032675 -
Vvi10g278 1017 Pfam Leucine Rich Repeat 215 236 IPR001611 GO:0005515
Vvi10g278 1017 Pfam Leucine Rich Repeat 191 213 IPR001611 GO:0005515
Vvi10g278 1017 Gene3D - 420 612 - -
Vvi10g278 1017 ProSitePatterns Serine/Threonine protein kinases active-site signature. 801 813 IPR008271 GO:0004672|GO:0006468
Vvi10g278 1017 Gene3D Ribonuclease Inhibitor 40 207 IPR032675 -
Vvi10g278 1017 PANTHER REPEAT TRANSMEMBRANE PROTEIN KINASE, PUTATIVE-RELATED 70 993 - -
Vvi10g278 1017 SUPERFAMILY L domain-like 87 327 - -
Vvi10g278 1017 MobiDBLite consensus disorder prediction 990 1017 - -
Vvi10g278 1017 ProSiteProfiles Leucine-rich repeat profile. 311 333 IPR001611 GO:0005515
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi10g278 Vvi19g63 ECH
Vvi10g278 Vvi19g42 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75982 PF00069 Pkinase 6.90E-48 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g278 - - vvi:100251456 1940.62