Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g28 ATGATTACTCAGATTCAAAAAATGGGTCTAAGCCTGCTAAATCAGGACGCGTCATATATCAAGTATTTGAATATTTTGTCGGTCCCACGTGATTGTGATCTTTTGATTTTGAACCCCGCCATGGACGGAGACAGGTTCGTAGTATCGGCAAGGGAAAACCCTAGAACGCTGGGGTTTGCCCCGGAGCGCGGTCCCGGAGGCAGCGCTACCGCCACCGCGAAGCCAATGTCCAATGAAATCTCCCAAAAGCCACTGGTCCCGATCGTCGACCGATTCAAGGCTCTGCTAAAGCAGCGGGAGGACGAACTTAGGGTTTTGTCTGGAGACGACGTCCCGCCGCCGACTACTGAGGAAATTGTGCGGCTTTACGAGATTGTGCTATCGGAACTCATCTTCAATTCGAAACCCATCATTACCGATCTCACGATTATTGCCGGAGATCACAAGGAGCACGCTGATGGTATTGCCGATGCAATTTGTGCTCGAATTGTCGAGGTCTCAGTTGAGCAAAAACTACCTTCTTTATATCTGTTGGATAGTATTGTCAAGAACATTGGTCGGGACTATATAAAGCACTTCTCCTCCCGTCTACCTGAGGTTTTCTGTGAGGCATACAGGCAAGTTCACCCTAACCTTTATACTGCCATGCGACATCTGTTTGGCACTTGGTCTGCGGTGTTCCCCCCATCTGTCCTACGTAAGATTGAAGCTCAACTGCAATTTTCACCCACACTAAACAACCAATCATCAGGCATGGCTTCGTTGAGAGCCTCTGAATCTCCTCGGCCAACTCATAGTATACATGTCAATCCAAAGTACTTGGAAGCAAGACATCAGTTTGAACATTCACCCGTTGATAGTAACATGCAGCATTCACGAGGAACTTCCTCAACTCTAAAGGTTTATGGGCAAAAGCCTGCCATTGGATATGATGAGTATGATTCTGGTCATACAGAAGTTATATCCTCACAAGCCAGAGCCCAAAGGTTGAACTCAACTGGAAGTGTGGGCCGGACACCATTTGCTCTTGGCGCTGATAAGCTGCTTCCCTCTTCAACTGCTAGAGTTGCAAAATCGACCTCTCCAAGAATTGGCACTGCTGGGTCTTCATCTCCTCCAGCTGAGAAGTTTTCAATGGATAATTCTCCCAGAAGAGTTGTTGAAAGAGCTTCTCCATCTCATCGTGGATTTGAATATGGACTTGTCAGATCGATGGGCAGGGATGAGGAGACAAGTGACAGGCAGAGAAAACACTGGTCCAATGATAGGTTTGAAACTTCTGCTGCGCACAACCTTAGTAATGGACGTGAGCGTCAAGGACTGAGAGCGTTAATTGATGCATATGGAAATGACAGAGGGCAAAGAACTTTAAATGATAAGCCTCCAAAGGTTGGACACCTGGATATGAATGGCACAGACAATAAGGTGCCTAAGAAAGCATGGCAGAATACTGAAGAGGAAGAGTATGATTGGGAAGATATGAACCCAACTTTAGCCAACCGCAGACAGTGTAATAATATCTTGCAATCATCAGTTTCACCTTTTGGAAGCTTTAGGACAAGACCTGGCTCTGGGGCACTTGGTGCGGCCCCACTGGAGTCTGATTTCAATAGGAGCAAATGGTCTGGTCAGGCACAGCTTTCTATGGTGGATGATTCTCCTGTTATTGCTGAAGATGTAGTTCCTACCACCAGTTTAGGCCGAGGATCAATAAGTAAGCCTGGATTTGGAAATGAAACAAAATTTCATGGTTCTCACTATCCTCAAGAATCCTGGAATTTGGTGCACCGTGTACCTCAGTCTTCACAACACAACCGTAATGCCAAAGGAAGAGGAAAGAATTTCAATACACCCTTTTTGGGGAGTGGAATATCGTCTTCAGCTGCCGAGACAATTTCTCCTCTTATTAGTAATATTCCAGATGCTGATGCACAACTTCGTAGACTCCCTACTGTTGCATCAAGAATGGGTTCTTCAAGTCTCAACTCTATGAATGTGGAGTCTTTGTTTTTACCTGAGTTAGATAGTAAGCTGCCTCAAATGGCTAATCGGCAGGCCGGATCAATTCCTTTAAATGGGAAAAACCAGACACAAGTCACTCGTTTACAACCACAGTTTTTGCCACAGGAGACTCATGGAAATTTTGTTCCATCTACCACAGCTCCTGTGTCATCATATTCAGTGGCACCTCCCTTGAACCCTGGATATACCCCACAAGGGCATGCTGCTGCTACAAGTACCATTTTGCTGAATCCAGTACCTGGTGTCCATTCGTCTATTCCAATCCACAATATCTCAAACAGCTCTAATACAGGTCCCATTGTCTCTAACCAACAACCTGGAAGTGCATTATCGGGTCTGATTAGTTCTCTCATGGCCCAAGGTTTGATCTCATTGGCAAAACAACCCACGGTTCAGGATTCTGTTGGAATTGAGTTTAATGTTGACCTCCTTAAGGTGCGCCATGAGTCTGCAATAAGTGCTCTATATGGTGATATGTCAAGACAGTGCACAACATGTGGTCTTCGATTCAAGTGCCAAGAAGAGCACAGTAGTCATATGGATTGGCATGTGACCAAGAACCGGATATCTAAAAACCGCAAACAGAAGCCTTCTCGCAAATGGTTTGTGAGTGCCAGTATGTGGCTTAGTAGTGCAGAGGCATTGGGCACTGATGCAGTTCCTGGGTTTTTGCCCACTGAGACAATTGCGGAAAAGAAGGATGATGAAGAACTGGCTGTTCCTGCTGATGAGGATCAGAATGTTTGTGCATTGTGTGGAGAGCCTTTTGATGATTTTTATAGTGACGAGACTGAGGAATGGATGTACAAAGGCGCTGTCTACTTGAATGCACCGGAGGGATCAGCAGCAGGCATGGATAGGTCACAGTTAGGTCCCATAGTGCATGCCAAATGCAGATCTGAGTCTAATGTGGTTTCCCCTGAAGATTTTGGACAAGATGAAGGGGGAAATATGGAAGAGGGTAGTAAGAGAAAAAGGATGCGAAGATAG 3012 45.75 MITQIQKMGLSLLNQDASYIKYLNILSVPRDCDLLILNPAMDGDRFVVSARENPRTLGFAPERGPGGSATATAKPMSNEISQKPLVPIVDRFKALLKQREDELRVLSGDDVPPPTTEEIVRLYEIVLSELIFNSKPIITDLTIIAGDHKEHADGIADAICARIVEVSVEQKLPSLYLLDSIVKNIGRDYIKHFSSRLPEVFCEAYRQVHPNLYTAMRHLFGTWSAVFPPSVLRKIEAQLQFSPTLNNQSSGMASLRASESPRPTHSIHVNPKYLEARHQFEHSPVDSNMQHSRGTSSTLKVYGQKPAIGYDEYDSGHTEVISSQARAQRLNSTGSVGRTPFALGADKLLPSSTARVAKSTSPRIGTAGSSSPPAEKFSMDNSPRRVVERASPSHRGFEYGLVRSMGRDEETSDRQRKHWSNDRFETSAAHNLSNGRERQGLRALIDAYGNDRGQRTLNDKPPKVGHLDMNGTDNKVPKKAWQNTEEEEYDWEDMNPTLANRRQCNNILQSSVSPFGSFRTRPGSGALGAAPLESDFNRSKWSGQAQLSMVDDSPVIAEDVVPTTSLGRGSISKPGFGNETKFHGSHYPQESWNLVHRVPQSSQHNRNAKGRGKNFNTPFLGSGISSSAAETISPLISNIPDADAQLRRLPTVASRMGSSSLNSMNVESLFLPELDSKLPQMANRQAGSIPLNGKNQTQVTRLQPQFLPQETHGNFVPSTTAPVSSYSVAPPLNPGYTPQGHAAATSTILLNPVPGVHSSIPIHNISNSSNTGPIVSNQQPGSALSGLISSLMAQGLISLAKQPTVQDSVGIEFNVDLLKVRHESAISALYGDMSRQCTTCGLRFKCQEEHSSHMDWHVTKNRISKNRKQKPSRKWFVSASMWLSSAEALGTDAVPGFLPTETIAEKKDDEELAVPADEDQNVCALCGEPFDDFYSDETEEWMYKGAVYLNAPEGSAAGMDRSQLGPIVHAKCRSESNVVSPEDFGQDEGGNMEEGSKRKRMRR* 1004
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 317862 328295 - Vvi10g28 Vvi10g28 770627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g28 1003 MobiDBLite consensus disorder prediction 353 391 - -
Vvi10g28 1003 PANTHER POLYADENYLATION AND CLEAVAGE FACTOR HOMOLOG 4 82 978 - -
Vvi10g28 1003 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 82 978 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Vvi10g28 1003 ProSitePatterns Zinc finger C2H2 type domain signature. 837 857 IPR013087 -
Vvi10g28 1003 SUPERFAMILY ENTH/VHS domain 115 246 IPR008942 -
Vvi10g28 1003 Gene3D - 113 240 IPR008942 -
Vvi10g28 1003 MobiDBLite consensus disorder prediction 452 480 - -
Vvi10g28 1003 SMART 558neu5 122 240 IPR006569 -
Vvi10g28 1003 MobiDBLite consensus disorder prediction 975 1003 - -
Vvi10g28 1003 CDD CID_Pcf11 120 240 - -
Vvi10g28 1003 Pfam CID domain 129 234 IPR006569 -
Vvi10g28 1003 ProSiteProfiles CID domain profile. 115 243 IPR006569 -
Vvi10g28 1003 MobiDBLite consensus disorder prediction 353 377 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g28 K14400 - vvi:100255600 1875.52