Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g280 ATGACGGCACGTAGAGCTCCCACCTCCCTCATCTATTATGGATTTTGTCTAGAAAATGGGGAATACACTGTGAGACTCCACTTTGCAGAGATAGAAATTACAGATAATGAAGCGTATCGTAGTCTTGGACAGCGCATATTTGACATTTATATTCAGGGGAAGTTAGAATGGAAGGATTTCAATATCATGGAAGAAGCAAACGGAACTGGTAAACCAGTCACAAAACAAATTAATGTTGCTGTGACTGATAATATGCTAGAGATCCGCTTGTATTGGGCAGGGAAAGGGACTACATCCATTCCTAAGAAAGGAACATATGGTCCTCTTATATCTGCTATTTCTGCATGTCACAGTTCTGTACCTTGTGCAGAAAGTCCCCTCTTGGTGAGCACAAAAGCGAGCAAGAAGAGAAAATTTTCCGTCATTGTTGGAGCTGTCACTTCACTGTTATGCCTGATTTTATTTGTTCTGGGTGTCCTTTGTTGGCGACACTATTTGGGTGACAAAAACACAAGGGAAAGAGAACTTAGAGGGCTGGATCTGCAAATAGGTTCCTTTACTTTGAGACAAATAAAAGCTGCGACGAACAACTTTGATTCTGCAAACAAGATTGGAGAAGGTGGTTTTGGATCTGTATTCAAGGGTCAACTATCAGATGGCACTCTTATTGCAGTGAAGCAGCTCTCTTCTAAGTCAAGGCAAGGGTACCGTGAATTTGTGAATGAGATTGGCTTGATTTCTGCTTTGCAACACCCAAATCTTGTGAAGCTTTATGGATGCTGTACTGAAGGAAACCAATTACTGCTGGTGTATGAGTACATGGAAAATAATTCTCTTGCTTATGCTCTTTTTGACAAAAATGATGCAAAAACAAGTGCTTTAAAACTGGACTGGGCAACAAGACAAAAGATATGTGTTGGGATAGCCAGAGGCATAGCATTTCTCCAGGAAGAATCAACTCTCAAGATTGTTCACAGGGATATCAAAGCTACAAATGTACTGCTTGATGAGGATCTAAATGCTAAGATATCAGACTTTGGATTAGCTAGGCTTAATGGAGAGGAGAGCACCCACATTAGCACTCGAGTTGCTGGAACCATAGGATACATGGCTCCTGAATATGCACTCTGGGGATATCTGACAAATAAGGCAGACATTTACAGCTTTGGGGTGGTTGCTTTAGAAATTGTCAGTGGGAAGAACAACACAAGTTACAAGCCAGAAAACGAATGTGTTTGTCTTCTTGATTTGGCCTTTGTTTTGCAACAAAGAGGTAGCTTAATGGAGATAGTAGATCCAAAGTTAGGGTCTGAATTCAACCAGGATGAGGCTGAAAGGATGATTAAAGTAGCTCTCTTGTGCACCAATGCATCTCCTACACTAAGGCCTACTATGTCAGCAGTGGTAAGCATGCTTGAAGGACAAACTGTTGTTCAGGATGTGATTTCAGATCCTGGCATCTACAATGATGATTTAAGATTTAGACCCCTCAGAGACCAACAGCAACAGATGCAAAATCAGAGTTTAAGTAGAAGCCAGCCTCCTAATCTGCCATCAGATGGAATATAG 1569 41.24 MTARRAPTSLIYYGFCLENGEYTVRLHFAEIEITDNEAYRSLGQRIFDIYIQGKLEWKDFNIMEEANGTGKPVTKQINVAVTDNMLEIRLYWAGKGTTSIPKKGTYGPLISAISACHSSVPCAESPLLVSTKASKKRKFSVIVGAVTSLLCLILFVLGVLCWRHYLGDKNTRERELRGLDLQIGSFTLRQIKAATNNFDSANKIGEGGFGSVFKGQLSDGTLIAVKQLSSKSRQGYREFVNEIGLISALQHPNLVKLYGCCTEGNQLLLVYEYMENNSLAYALFDKNDAKTSALKLDWATRQKICVGIARGIAFLQEESTLKIVHRDIKATNVLLDEDLNAKISDFGLARLNGEESTHISTRVAGTIGYMAPEYALWGYLTNKADIYSFGVVALEIVSGKNNTSYKPENECVCLLDLAFVLQQRGSLMEIVDPKLGSEFNQDEAERMIKVALLCTNASPTLRPTMSAVVSMLEGQTVVQDVISDPGIYNDDLRFRPLRDQQQQMQNQSLSRSQPPNLPSDGI* 523
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3591466 3595236 + Vvi10g280 Vvi10g280 770879
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g280 522 ProSiteProfiles Protein kinase domain profile. 198 478 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g280 522 CDD STKc_IRAK 204 474 - -
Vvi10g280 522 Gene3D Transferase(Phosphotransferase) domain 1 274 484 - -
Vvi10g280 522 Gene3D Phosphorylase Kinase; domain 1 164 273 - -
Vvi10g280 522 ProSitePatterns Protein kinases ATP-binding region signature. 204 226 IPR017441 GO:0005524
Vvi10g280 522 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 1 508 - -
Vvi10g280 522 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 1 508 - -
Vvi10g280 522 SUPERFAMILY Protein kinase-like (PK-like) 182 475 IPR011009 -
Vvi10g280 522 MobiDBLite consensus disorder prediction 499 522 - -
Vvi10g280 522 SMART serkin_6 198 472 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g280 522 Gene3D - 1 119 - -
Vvi10g280 522 ProSitePatterns Serine/Threonine protein kinases active-site signature. 323 335 IPR008271 GO:0004672|GO:0006468
Vvi10g280 522 Pfam Malectin domain 2 113 IPR021720 -
Vvi10g280 522 Pfam Protein tyrosine and serine/threonine kinase 201 472 IPR001245 GO:0004672|GO:0006468
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75983 PF07714 PK_Tyr_Ser-Thr 1.30E-48 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g280 - - vvi:100256593 1026.93