Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g281 ATGTTTTCTGGAACTGTTCCCCCCGAGCTTGGGAAACTTGTCAACTTGGAGAATCTCATTCTTAGTTCTAACAATCTCACTGGAGTGTTGCCTGCAGATCTCGCAAATCTGACTAATTTAATAGAATTTAGGATTAGCAGTAACAATTTCGCTGGAAAAATACCCCATTTCATTCAAAGTTGGAAACGACTCCAAAAATTAGAGATCCAAGCTAGTGGTTTTGAAGGGCCCATACCTTCTGATATTTCTGTCTTGAATAATTTGTCCGAACTAAGAATTAGTGACTTAACGGGAGAGAGTTCCAAATTTCCACCACTAACAAACATGATAAGCTTGCGGAGATTGATGTTGAGGAGCTGTAATATCTCTGATCTGATCCCCAAAGATATAGCAGATATGAAAAATTTACTAGCTCTAGACCTTAGCTTCAACAAGTTGGAAGGAAACATTCCAGATCTCAGAGGCCTAGGAAGCCTGGAATTAGTGTGTCTATCAAACAACTTGCTTACGGGAAATATTCCAGACTGGATCAAGGATAGAGATTATACACACCAAATAGATCTTTCTTACAATAACTTTTCTGAGCAGTCTGCACCATCTTTTATTAATGGCACGAAACTTGGTTATTTTTCCATCTTTTATGTTTGA 648 38.12 MFSGTVPPELGKLVNLENLILSSNNLTGVLPADLANLTNLIEFRISSNNFAGKIPHFIQSWKRLQKLEIQASGFEGPIPSDISVLNNLSELRISDLTGESSKFPPLTNMISLRRLMLRSCNISDLIPKDIADMKNLLALDLSFNKLEGNIPDLRGLGSLELVCLSNNLLTGNIPDWIKDRDYTHQIDLSYNNFSEQSAPSFINGTKLGYFSIFYV* 216
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3605539 3609570 + Vvi10g281 Vvi10g281 770880
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g281 215 Pfam Leucine Rich Repeat 15 37 IPR001611 GO:0005515
Vvi10g281 215 SUPERFAMILY L domain-like 2 212 - -
Vvi10g281 215 PANTHER REPEAT TRANSMEMBRANE PROTEIN KINASE, PUTATIVE-RELATED 1 125 - -
Vvi10g281 215 PANTHER REPEAT TRANSMEMBRANE PROTEIN KINASE, PUTATIVE-RELATED 125 194 - -
Vvi10g281 215 Gene3D Ribonuclease Inhibitor 1 99 IPR032675 -
Vvi10g281 215 Gene3D Ribonuclease Inhibitor 100 208 IPR032675 -
Vvi10g281 215 ProSiteProfiles Leucine-rich repeat profile. 135 157 IPR001611 GO:0005515
Vvi10g281 215 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 125 194 - -
Vvi10g281 215 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 1 125 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi10g281 Vvi19g42 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g281 - - vvi:100261690 388.652