Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g282 ATGAGAGACAATGAATCCTTTCACAGCCTTGGAAGACGCATTTTTGATGTCTACATTCAGGATAAGCTGGAACTAAAGGATTTTGATATTGCACAAGCAGCAAGTGGGGTAGATAAGGTAGTTGTAAAAGAATTTAAAACGTCTGTAAAGAATAAAACTTTAGAGATCCGCTTTCATTGGGCTGGAAAAGGGACAACAGCTGTTCCAACAAGAGCAACTTATGGTCCCCTCATATCAGCTATTTCTGTGGAATCCGACTTCCCGATTCCTTCTGAAGGCAAGAGGAAGAAGATACTTATTGGATCTCTGGCTTTGGCATTAGTTCTCATTCTCATAATTTCAGGCATTGCTTGCTGGAAATGCTACTTTGGAGGCAAAAGCTCAACAGAACAAGATTTGAGAAGATTAGATCTGCAAACTGGTTTATTTACCTTAAGACAGATCAAAGCCGCTACTAACAACTTCAATGCTGCAAATAAGATTGGGGAAGGAGGTTTTGGACCTGTCTACAAGGGCCAACTATCGAATGGCACTCTCATTGCAGTGAAGCAGCTCTCTTCCAAGTCAAGACAAGGGAACCGTGAATTTGTGAATGAGATTGGCATAATTTCTGGTTTGCAACACCCGAATCTTGTAAAACTTTATGGATGTTGTATTGAAAGAACTCAATTGCTGCTGGTGTATGAGTACATGGAAAATAATTCTCTCGCACGTGCTCTTTTTGGTGCAGAAACAAGTGTTCCAATATTGGATTGGGCAACAAGGCAAAAGATATGCATTGGATTAGCTAGAGGTCTAGCATTTCTCCATGAAGAATCAACTCTCAAGATTGTTCACAGGGACATCAAAGCTGCAAATGTACTGCTTGATGGTGATCTAAAAGCTAAGATATCAGACTTTGGATTAGCTAAACTTAATGAAGAGGAGAACACCCACATTAGCACTCGGATTGCTGGAACCAGAGGATACATGGCTCCAGAATATGCACTCTGGGGACATCTAACAGATAAGGCAGACATTTACAGCTTTGGGGTGGTAGCTTTAGAAATTGTCAGTGGGAAGAACAACTCAAGTCGCAAGCCGGAAAACGAATGTGTTTGTCTTCTTGACAGGGCCTTTGCTTTGCAACAAAAAGGAAGCTTAATGGAGATAGTGGATCCAAAGTTAGGATCTGAATTCAACCGGGATGAGGCTGAGAGGATGATTAAAGTAGCTATCTTATGCACCAATGCATCTCCTACACTAAGGCCTATTATGTCAGCTGTGGTAAGCATGCTTGAAGGACAAACCATCGTTCCGGAAGTGATCTCAGATGCTAGCATGGATGAGGATTATTTGAATTTTAAATCACTCGGAGACTATCATAAACGGATGCAAAAGCAGATTTTAAGTGGAAGTGAGGCTTCAAAATTTTCATCAGATGGGACAATAGCTACTGGTTCTTCCTCTACATCTGCACAAGATCTCTATAAAAACAATCCTGATTCCATTAATTTCAGCGACAGTTCTTCCTTGTTGTCACCTCAAAATTCTTGA 1536 40.82 MRDNESFHSLGRRIFDVYIQDKLELKDFDIAQAASGVDKVVVKEFKTSVKNKTLEIRFHWAGKGTTAVPTRATYGPLISAISVESDFPIPSEGKRKKILIGSLALALVLILIISGIACWKCYFGGKSSTEQDLRRLDLQTGLFTLRQIKAATNNFNAANKIGEGGFGPVYKGQLSNGTLIAVKQLSSKSRQGNREFVNEIGIISGLQHPNLVKLYGCCIERTQLLLVYEYMENNSLARALFGAETSVPILDWATRQKICIGLARGLAFLHEESTLKIVHRDIKAANVLLDGDLKAKISDFGLAKLNEEENTHISTRIAGTRGYMAPEYALWGHLTDKADIYSFGVVALEIVSGKNNSSRKPENECVCLLDRAFALQQKGSLMEIVDPKLGSEFNRDEAERMIKVAILCTNASPTLRPIMSAVVSMLEGQTIVPEVISDASMDEDYLNFKSLGDYHKRMQKQILSGSEASKFSSDGTIATGSSSTSAQDLYKNNPDSINFSDSSSLLSPQNS* 512
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3609600 3616001 + Vvi10g282 Vvi10g282 770881
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g282 511 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 2 466 - -
Vvi10g282 511 Gene3D Phosphorylase Kinase; domain 1 123 230 - -
Vvi10g282 511 MobiDBLite consensus disorder prediction 465 511 - -
Vvi10g282 511 ProSiteProfiles Protein kinase domain profile. 155 432 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g282 511 SMART serkin_6 155 424 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g282 511 Pfam Protein kinase domain 157 423 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g282 511 Pfam Malectin domain 8 81 IPR021720 -
Vvi10g282 511 ProSitePatterns Serine/Threonine protein kinases active-site signature. 277 289 IPR008271 GO:0004672|GO:0006468
Vvi10g282 511 SUPERFAMILY Protein kinase-like (PK-like) 138 430 IPR011009 -
Vvi10g282 511 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 2 466 - -
Vvi10g282 511 Gene3D - 3 86 - -
Vvi10g282 511 Gene3D Transferase(Phosphotransferase) domain 1 231 441 - -
Vvi10g282 511 CDD STKc_IRAK 161 428 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75984 PF00069 Pkinase 4.80E-47 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g282 - - vvi:100261690 940.643