Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi10g284 | ATGACAGCACGTAAAGCTCCCCTTTCCCTCACCTATTTTGGATTTTGTCTGAAAAATGGAGATTACAATGTACGCCTCCACTTTGCGGAGATAGAATTTAAAGATGAGGAAGCATATAGCAAGCTTGGAAGACGCATATTTAATATCTATATTCAGGGCAAGTTGGTGTGGGAGGATTTCAATATCATGGAGGAAGCAAATGGAATTGGTAAAGAAGTCATTAAACAAAGTAATGTGACTGTGACGAACAATACCCTAGAGATCCGCTTGTATTGGGCTGGGAAAGGGACAACATGTATCCCTAAGAGAGGAAGATATGGTCCTCTAATATCTGCTATTTCTATATGTCCCAGTAAGTTAAATATTCATGAGCCTCTCCTTTCAAAATTAGTACAATTGCTGCAGCTGATAATTGTGTGTTCTTTTTTTATGTTTAATTTTCCTTACAAAAAAGTCACAATTGTTGGAGTTGCCACTTCTGTATCATGCCTTATTCTCTTCGTACTAGGTGTTCTTTGTTGGAAGTACTATTTTGGGGGCAAAAACATGATGGAAAAAGAACTTAGAGGGCTAGATCTGCAAACCGGTTCCTTCACTTTGAGACAAATAAAAGCTGCAACCAACAACTTCGATTATGCGAACAAGATTGGAGAAGGGGGTTTTGGATCCGTATACAAGGGTCAACTATCAGATGGCACTGTTATTGCTGTGAAGCAGCTCTCTTCTAAATCAAGGCAAGGGAACCGTGAATTTGTGAATGAGATAGGCATCATTTCATGTTTGCATCACCCCAATCTCGTAAAGCTTTATGGGTGTTGTATTGAAGGAAATCAATTGCTGCTTGTCTATGAGTACATGGAAAATAATTCTCTTGCACGTGCTCTTTTTGGTAAAAATGAAAGAAGTGTTTTGAAATTGGATTGGGCTACGAGGTACAAGATATGTGTTGGGATAGCCAAGGGTCTCACATTTCTCCATGAAGAATCAAGAATCATGATAGTTCATAGGGACATCAAAGCTACAAATGTACTCCTTGATGAGAATCTAAATGCTAAAATATCAGATTTTGGATTAGCTAAGCTCAATGAAGGGGAGAACACCCACATTAGCACCCGAATTGCTGGAACCATTGGATATATGGCTCCAGAGTACGCACTATGGGGTTATCTGACAGACAAAGCGGATGTTTACAGCTTTGGGGTGGTCACACTAGAAATTGTTAGTGGGAAGAACAACTCAAATTACACGCCAGACACCACATGCACTTGCCTTCTTGATTGGGCTTTTGTTTTGAAACAAAAGGGAAGCTTGATGGAATTGGTAGATCCAAACTTGGGAACTGAATTTAATAAGAAAGAGGCAGAAACAATGATTAAAGTAGCTCTCCTATGTACCAATGCATCTTCTAAACTTAGGCCTACCATGTCAGCAGTGCTAAGAATGCTTGAAGGACAAGATATTATTCCAGAAGTGATCTCAGATCCTAGCATCTATGGCAAAGATATGAGAATTAGTCCCCTCAGAGACCACTATCAACACATGGAAATGCAGAGTTCTAGTGGAAGCCTGGCCCCAAATTTTTCATTAGATGGAGCACAGGTTGGTTCATCCTCTTCTGCTTAA | 1623 | 39.8 | MTARKAPLSLTYFGFCLKNGDYNVRLHFAEIEFKDEEAYSKLGRRIFNIYIQGKLVWEDFNIMEEANGIGKEVIKQSNVTVTNNTLEIRLYWAGKGTTCIPKRGRYGPLISAISICPSKLNIHEPLLSKLVQLLQLIIVCSFFMFNFPYKKVTIVGVATSVSCLILFVLGVLCWKYYFGGKNMMEKELRGLDLQTGSFTLRQIKAATNNFDYANKIGEGGFGSVYKGQLSDGTVIAVKQLSSKSRQGNREFVNEIGIISCLHHPNLVKLYGCCIEGNQLLLVYEYMENNSLARALFGKNERSVLKLDWATRYKICVGIAKGLTFLHEESRIMIVHRDIKATNVLLDENLNAKISDFGLAKLNEGENTHISTRIAGTIGYMAPEYALWGYLTDKADVYSFGVVTLEIVSGKNNSNYTPDTTCTCLLDWAFVLKQKGSLMELVDPNLGTEFNKKEAETMIKVALLCTNASSKLRPTMSAVLRMLEGQDIIPEVISDPSIYGKDMRISPLRDHYQHMEMQSSSGSLAPNFSLDGAQVGSSSSA* | 541 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 3643627 | 3657896 | + | Vvi10g284 | Vvi10g284 | 770883 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi10g284 | 540 | PANTHER | LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED | 1 | 510 | - | - | |
Vvi10g284 | 540 | ProSiteProfiles | Protein kinase domain profile. | 210 | 488 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vvi10g284 | 540 | Pfam | Protein tyrosine and serine/threonine kinase | 213 | 481 | IPR001245 | GO:0004672|GO:0006468 | |
Vvi10g284 | 540 | MobiDBLite | consensus disorder prediction | 519 | 540 | - | - | |
Vvi10g284 | 540 | ProSitePatterns | Protein kinases ATP-binding region signature. | 216 | 238 | IPR017441 | GO:0005524 | |
Vvi10g284 | 540 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 333 | 345 | IPR008271 | GO:0004672|GO:0006468 | |
Vvi10g284 | 540 | CDD | STKc_IRAK | 216 | 484 | - | - | |
Vvi10g284 | 540 | Gene3D | Transferase(Phosphotransferase) domain 1 | 286 | 490 | - | - | |
Vvi10g284 | 540 | Gene3D | - | 1 | 120 | - | - | |
Vvi10g284 | 540 | SUPERFAMILY | Protein kinase-like (PK-like) | 196 | 487 | IPR011009 | - | |
Vvi10g284 | 540 | SMART | serkin_6 | 210 | 482 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vvi10g284 | 540 | Gene3D | Phosphorylase Kinase; domain 1 | 179 | 285 | - | - | |
Vvi10g284 | 540 | PANTHER | PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA | 1 | 510 | - | - | |
Vvi10g284 | 540 | Pfam | Malectin domain | 2 | 113 | IPR021720 | - |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
75985 | PF07714 | PK_Tyr_Ser-Thr | 1.30E-49 | CL0016 | Vvi | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi10g284 | - | - | vvi:100266879 | 993.801 |