Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g284 ATGACAGCACGTAAAGCTCCCCTTTCCCTCACCTATTTTGGATTTTGTCTGAAAAATGGAGATTACAATGTACGCCTCCACTTTGCGGAGATAGAATTTAAAGATGAGGAAGCATATAGCAAGCTTGGAAGACGCATATTTAATATCTATATTCAGGGCAAGTTGGTGTGGGAGGATTTCAATATCATGGAGGAAGCAAATGGAATTGGTAAAGAAGTCATTAAACAAAGTAATGTGACTGTGACGAACAATACCCTAGAGATCCGCTTGTATTGGGCTGGGAAAGGGACAACATGTATCCCTAAGAGAGGAAGATATGGTCCTCTAATATCTGCTATTTCTATATGTCCCAGTAAGTTAAATATTCATGAGCCTCTCCTTTCAAAATTAGTACAATTGCTGCAGCTGATAATTGTGTGTTCTTTTTTTATGTTTAATTTTCCTTACAAAAAAGTCACAATTGTTGGAGTTGCCACTTCTGTATCATGCCTTATTCTCTTCGTACTAGGTGTTCTTTGTTGGAAGTACTATTTTGGGGGCAAAAACATGATGGAAAAAGAACTTAGAGGGCTAGATCTGCAAACCGGTTCCTTCACTTTGAGACAAATAAAAGCTGCAACCAACAACTTCGATTATGCGAACAAGATTGGAGAAGGGGGTTTTGGATCCGTATACAAGGGTCAACTATCAGATGGCACTGTTATTGCTGTGAAGCAGCTCTCTTCTAAATCAAGGCAAGGGAACCGTGAATTTGTGAATGAGATAGGCATCATTTCATGTTTGCATCACCCCAATCTCGTAAAGCTTTATGGGTGTTGTATTGAAGGAAATCAATTGCTGCTTGTCTATGAGTACATGGAAAATAATTCTCTTGCACGTGCTCTTTTTGGTAAAAATGAAAGAAGTGTTTTGAAATTGGATTGGGCTACGAGGTACAAGATATGTGTTGGGATAGCCAAGGGTCTCACATTTCTCCATGAAGAATCAAGAATCATGATAGTTCATAGGGACATCAAAGCTACAAATGTACTCCTTGATGAGAATCTAAATGCTAAAATATCAGATTTTGGATTAGCTAAGCTCAATGAAGGGGAGAACACCCACATTAGCACCCGAATTGCTGGAACCATTGGATATATGGCTCCAGAGTACGCACTATGGGGTTATCTGACAGACAAAGCGGATGTTTACAGCTTTGGGGTGGTCACACTAGAAATTGTTAGTGGGAAGAACAACTCAAATTACACGCCAGACACCACATGCACTTGCCTTCTTGATTGGGCTTTTGTTTTGAAACAAAAGGGAAGCTTGATGGAATTGGTAGATCCAAACTTGGGAACTGAATTTAATAAGAAAGAGGCAGAAACAATGATTAAAGTAGCTCTCCTATGTACCAATGCATCTTCTAAACTTAGGCCTACCATGTCAGCAGTGCTAAGAATGCTTGAAGGACAAGATATTATTCCAGAAGTGATCTCAGATCCTAGCATCTATGGCAAAGATATGAGAATTAGTCCCCTCAGAGACCACTATCAACACATGGAAATGCAGAGTTCTAGTGGAAGCCTGGCCCCAAATTTTTCATTAGATGGAGCACAGGTTGGTTCATCCTCTTCTGCTTAA 1623 39.8 MTARKAPLSLTYFGFCLKNGDYNVRLHFAEIEFKDEEAYSKLGRRIFNIYIQGKLVWEDFNIMEEANGIGKEVIKQSNVTVTNNTLEIRLYWAGKGTTCIPKRGRYGPLISAISICPSKLNIHEPLLSKLVQLLQLIIVCSFFMFNFPYKKVTIVGVATSVSCLILFVLGVLCWKYYFGGKNMMEKELRGLDLQTGSFTLRQIKAATNNFDYANKIGEGGFGSVYKGQLSDGTVIAVKQLSSKSRQGNREFVNEIGIISCLHHPNLVKLYGCCIEGNQLLLVYEYMENNSLARALFGKNERSVLKLDWATRYKICVGIAKGLTFLHEESRIMIVHRDIKATNVLLDENLNAKISDFGLAKLNEGENTHISTRIAGTIGYMAPEYALWGYLTDKADVYSFGVVTLEIVSGKNNSNYTPDTTCTCLLDWAFVLKQKGSLMELVDPNLGTEFNKKEAETMIKVALLCTNASSKLRPTMSAVLRMLEGQDIIPEVISDPSIYGKDMRISPLRDHYQHMEMQSSSGSLAPNFSLDGAQVGSSSSA* 541
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
10 3643627 3657896 + Vvi10g284 Vvi10g284 770883
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g284 540 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 1 510 - -
Vvi10g284 540 ProSiteProfiles Protein kinase domain profile. 210 488 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g284 540 Pfam Protein tyrosine and serine/threonine kinase 213 481 IPR001245 GO:0004672|GO:0006468
Vvi10g284 540 MobiDBLite consensus disorder prediction 519 540 - -
Vvi10g284 540 ProSitePatterns Protein kinases ATP-binding region signature. 216 238 IPR017441 GO:0005524
Vvi10g284 540 ProSitePatterns Serine/Threonine protein kinases active-site signature. 333 345 IPR008271 GO:0004672|GO:0006468
Vvi10g284 540 CDD STKc_IRAK 216 484 - -
Vvi10g284 540 Gene3D Transferase(Phosphotransferase) domain 1 286 490 - -
Vvi10g284 540 Gene3D - 1 120 - -
Vvi10g284 540 SUPERFAMILY Protein kinase-like (PK-like) 196 487 IPR011009 -
Vvi10g284 540 SMART serkin_6 210 482 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g284 540 Gene3D Phosphorylase Kinase; domain 1 179 285 - -
Vvi10g284 540 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 1 510 - -
Vvi10g284 540 Pfam Malectin domain 2 113 IPR021720 -
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75985 PF07714 PK_Tyr_Ser-Thr 1.30E-49 CL0016 Vvi PK
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g284 - - vvi:100266879 993.801