Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g288 ATGGCTGTGGAATCGAAGACGGCGGTGAGGTTCACCTTGGGGAAGCAGTCGTCCCTGGCGCCGGAAAGGGCCCGGGATGAAGCTCTGACCGAAGGTGAGCAGGGAGATGTTGAGGGGATTGATCCCAGGGTCAGGCTGATGTATCTGGCAAATGAGGGCGACTTGGAGGGGCTGCGCGAGCTTTTGGATTCGGGAATGGATGTCAATTTCAGGGATATTGATAATCGGACGGCTCTCCATGTGGCCGCGTGTCAGGGCTTCAGCGATGTGGTTGAGTTTTTGTTGAAGAATGGGGCTGAAATTGACCTCGAAGATCGCTGGGGAAGCACACCCCTTGCAGATGCAATACATTACAAAAACCATGATGTAATCAAACTTCTGGAGAAACATGGTGCACAACATCTGATGGCTCCCATGCATGTAAATAATGCCCGTGAAGTCCCAGAGTATGAAATTGATCCTAAGGAGCTTGATTTTACAAACAGTGTTGACATAACTAAGGGAACCTACCGCATTGCATCATGGCGTGGAATTCAAGTTGCTGTAAAAAGGCTTGGGGACGAAGTGATAATTGATGAGGATAAAGTGAAGGCATTTAGAGATGAGCTTGCATTGCTTCAGAAGATACGACATCCCAATGTAGTCCAGTTTCTGGGTGCTGTAACTCAAAGTAGTCCAATGATGATTGTGACAGAATATTTACCCAAGGGAGATCTTCATGCATTCTTGAAAAGAAAAGGAGCATTAAAAACGGCCACAGCTGTGAAATTTGCGCTTGATATTGCAAGGGGAATGAATTATTTGCATGAGCATAGACCAGAAGCAATAATTCATCGTGATCTAGAGCCTTCAAATATATTGCGGGATGATTCGGGACATCTGAAAGTTGCAGACTTTGGAGTTAGCAAGCTGCTGAAAGTTGCTAATACAGTTAAAGAAGATTACCCTCTAATCTGTCAAGAAACTTCTTGTCGATATTTGGCTCCAGAGGTTTTTAAAAATGAAGCTTATGATACCAAGGTGGATGTTTTTTCATTTGCTCTAATTCTACAAGAGATGATTGAGGGCTGTCCACCTTTCAGTGCAAAGCCAGAAAATGAGGTTCCTAAAGTATATGCTGCACAAGAGCGACCGCCTTTCAGAGCTCCATCCAAGCTTTATTCTCATGGACTTAAAGAGTTGATTGAGGAATGCTGGAATGAGAATCCTACGAAGAGACCAACATTTGGGCAAATACTTACTAGGCTGGACCGCATTTATAACCATCTTGGTCAAAAGAGGCGTTGGAAGGTTAGGCCATTGAAATGTTTTCAGAACCTGGAAGCAATGTGGAAGAAAGATCATTCTGATCTAAGCACCTCCAGCCGTTCATCTCGTCCAAACCGGTAG 1389 44.71 MAVESKTAVRFTLGKQSSLAPERARDEALTEGEQGDVEGIDPRVRLMYLANEGDLEGLRELLDSGMDVNFRDIDNRTALHVAACQGFSDVVEFLLKNGAEIDLEDRWGSTPLADAIHYKNHDVIKLLEKHGAQHLMAPMHVNNAREVPEYEIDPKELDFTNSVDITKGTYRIASWRGIQVAVKRLGDEVIIDEDKVKAFRDELALLQKIRHPNVVQFLGAVTQSSPMMIVTEYLPKGDLHAFLKRKGALKTATAVKFALDIARGMNYLHEHRPEAIIHRDLEPSNILRDDSGHLKVADFGVSKLLKVANTVKEDYPLICQETSCRYLAPEVFKNEAYDTKVDVFSFALILQEMIEGCPPFSAKPENEVPKVYAAQERPPFRAPSKLYSHGLKELIEECWNENPTKRPTFGQILTRLDRIYNHLGQKRRWKVRPLKCFQNLEAMWKKDHSDLSTSSRSSRPNR* 463
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3697567 3713462 + Vvi10g288 Vvi10g288 770887
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g288 462 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 11 445 - -
Vvi10g288 462 CDD STKc_MAP3K-like 170 416 - -
Vvi10g288 462 PANTHER INTEGRIN-LINKED KINASE FAMILY PROTEIN 11 445 - -
Vvi10g288 462 Gene3D - 14 150 IPR036770 -
Vvi10g288 462 SUPERFAMILY Ankyrin repeat 45 134 IPR036770 -
Vvi10g288 462 Pfam Protein tyrosine and serine/threonine kinase 164 416 IPR001245 GO:0004672|GO:0006468
Vvi10g288 462 ProSiteProfiles Ankyrin repeat region circular profile. 74 106 - -
Vvi10g288 462 SUPERFAMILY Protein kinase-like (PK-like) 171 416 IPR011009 -
Vvi10g288 462 SMART ANK_2a 74 103 IPR002110 GO:0005515
Vvi10g288 462 SMART ANK_2a 41 70 IPR002110 GO:0005515
Vvi10g288 462 SMART ANK_2a 107 136 IPR002110 GO:0005515
Vvi10g288 462 Pfam Ankyrin repeats (3 copies) 46 133 IPR002110 GO:0005515
Vvi10g288 462 Gene3D Transferase(Phosphotransferase) domain 1 235 459 - -
Vvi10g288 462 Gene3D Phosphorylase Kinase; domain 1 151 234 - -
Vvi10g288 462 ProSiteProfiles Ankyrin repeat profile. 74 106 IPR002110 GO:0005515
Vvi10g288 462 PIRSF ILK 1 440 - -
Vvi10g288 462 ProSiteProfiles Protein kinase domain profile. 124 420 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75986 PF07714 PK_Tyr_Ser-Thr 3.70E-55 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g288 - - vvi:100256688 897.116