Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g29 ATGATTTCTTCAATTAAACAATCAACTGGGTCTTTCACTCGTTGCGATTTCTTGCCCAGAAGGCAGCGGTGTGTGGCGAAATCGGATGTTGTTTCAGTGCCCAGTTCTGCAAATGTGCAGGGGTTTAAGTGTTCTGCAAAACCCTTGTACATTTGTTCGGTTGAAGGGTTTGGGTCCAGATCAATTGGTTCCAAGTCCAGTAGCGTTTGCAGGGCTTATGAGGCGGAACGATCGCAGCCTTTGGACCTCAACATTGAACTTTCGGACCAGGAGGCGCGATCGGAGGCTGCCCAGAAGCTTAAGATTGGTATTTATTTTGCGACTTGGTGGGCTCTGAATGTGGTGTTCAATATATACAACAAGAAGGTTTTGAACGCTTTTCCTTATCCTTGGCTCACCTCAACTCTGTCGCTCGCAACTGGGTCGCTGATGATGTTGATCTCCTGGGCTGTGAGGATCGCTGAACCGCCCAAGACCGATTTGGACTTCTGGAAAACCCTCTTTCCTGTTGCAGTAGCTCATACAATTGGTCATGTAGCAGCAACTGTTAGCATGTCAAAAGTTGCAGTTTCCTTCACCCACATCATCAAGAGTGGTGAGCCTGCTTTCAGTGTCTTGGTTTCAAGGTTTCTCTTAGGCGAGACCTTTCCGGTGCCGGTCTACTTCTCACTTCTGCCAATTATTGGAGGCTGCGCACTGGCTGCTGTCACTGAACTCAACTTCAATATGACTGGGTTTATGGGGGCTATGATTTCAAATCTGGCATTTGTGTTCCGGAACATATTCTCAAAGAGAGGGATGAAGGGGAAGTCTGTTGGGGGAATGAACTACTATGCCTGTCTTTCCATGTTGTCTCTCTTGATTCTCACACCTTTCGCCATTGCTGTGGAAGGGCCCCAGATGTGGGCGGCTGGCTGGCAAAAAGCTATCTCTCAGATTGGACCAAATTTCATATGGTGGGTGGCGGCTCAGAGTGTCTTCTATCACTTGTATAATCAGGTATCATACATGTCCCTGGATCAGATCTCTCCCTTGACGTTTAGCATAGGAAACACGATGAAGCGGATTTCTGTCATAGTCTCCTCCATAATCATCTTCCATACACCTGTTCAACCCATCAATGCCCTTGGAGCTGCCATTGCAATCCTTGGAACGTTTCTCTATTCGCAGGCAAAGCAGTGA 1182 47.55 MISSIKQSTGSFTRCDFLPRRQRCVAKSDVVSVPSSANVQGFKCSAKPLYICSVEGFGSRSIGSKSSSVCRAYEAERSQPLDLNIELSDQEARSEAAQKLKIGIYFATWWALNVVFNIYNKKVLNAFPYPWLTSTLSLATGSLMMLISWAVRIAEPPKTDLDFWKTLFPVAVAHTIGHVAATVSMSKVAVSFTHIIKSGEPAFSVLVSRFLLGETFPVPVYFSLLPIIGGCALAAVTELNFNMTGFMGAMISNLAFVFRNIFSKRGMKGKSVGGMNYYACLSMLSLLILTPFAIAVEGPQMWAAGWQKAISQIGPNFIWWVAAQSVFYHLYNQVSYMSLDQISPLTFSIGNTMKRISVIVSSIIIFHTPVQPINALGAAIAILGTFLYSQAKQ* 394
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 340674 344914 + Vvi10g29 Vvi10g29 770628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g29 393 SUPERFAMILY Multidrug resistance efflux transporter EmrE 144 236 - -
Vvi10g29 393 TIGRFAM tpt: Tpt phosphate/phosphoenolpyruvate translocator 100 392 IPR004696 GO:0016021|GO:0022857|GO:0055085
Vvi10g29 393 Pfam Triose-phosphate Transporter family 100 389 IPR004853 -
Vvi10g29 393 PANTHER GLUCOSE-6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 2, CHLOROPLASTIC-LIKE 12 393 - -
Vvi10g29 393 PANTHER SOLUTE CARRIER FAMILY 35 12 393 - -
Vvi10g29 393 SUPERFAMILY Multidrug resistance efflux transporter EmrE 292 390 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g29 K15283 K05350 vvi:100241727 745.347