Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g290 ATGGGAAGGGGGAAGATCGAGATCAAGCGGATCGAAAACACCACTAACCGGCAGGTTACTTTCTGCAAGCGCCGCAACGGCTTACTCAAGAAGGCCTATGAATTATCTGTCCTATGTGATGCAGAGGTAGCCCTCATCGTCTTCTCCAGCCGCGGCCGCCTCTACGAATATGCCAACAACAGTGTTAAATCAACAATTGAGAGGTATAAGAAGGCAAGCGCTGATTCCTCCAACACCGGGTCCGTTTCTGAAGCCAATGCTCAGTTCTACCAGCAAGAATCCTCCAAACTGCATCAGCAGATTCGTAATTTGCAGAATTCGAACAGGCACATGCTGGGTGAGTCTCTGGGCTCCTTGAATTTCAAGGACCTCAAGAGCCTGGAGATTCGGTTAGAGAAAGGCATAAGTAGAATCAGATCCAGAAAGAATGAGCTGTTGTTTGCTGAGATCGAGTATATGCAAAAGAGGGAAATAGACTTGCATAATGATAACCAGTATCTCCGAGCAAGGATAGCCGAGAATGAGAGAAACGAACAGCAGATGAGCTTGATGCCAGGAGGAGCTAACTATGAACTCATGCCATCTCAGCAGTTCGACTCTAGAAACTATTTCCAACTAAATGGACTGCAACCAAATCAATCATACTCTCGCCAAGACCAACCAGCTCTTCAATTAGTGTAA 681 46.4 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVKSTIERYKKASADSSNTGSVSEANAQFYQQESSKLHQQIRNLQNSNRHMLGESLGSLNFKDLKSLEIRLEKGISRIRSRKNELLFAEIEYMQKREIDLHNDNQYLRARIAENERNEQQMSLMPGGANYELMPSQQFDSRNYFQLNGLQPNQSYSRQDQPALQLV* 227
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3730146 3738385 + Vvi10g290 Vvi10g290 770889
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g290 226 Gene3D - 13 92 IPR036879 GO:0003677|GO:0046983
Vvi10g290 226 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vvi10g290 226 SUPERFAMILY SRF-like 2 75 IPR036879 GO:0003677|GO:0046983
Vvi10g290 226 Pfam K-box region 85 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vvi10g290 226 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vvi10g290 226 PANTHER FLORAL HOMEOTIC PROTEIN AGAMOUS-LIKE 1 216 - -
Vvi10g290 226 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Vvi10g290 226 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vvi10g290 226 Coils Coil 87 107 - -
Vvi10g290 226 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vvi10g290 226 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vvi10g290 226 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vvi10g290 226 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vvi10g290 226 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 216 - -
Vvi10g290 226 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13662 PF01486 K-box 6.20E-29 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g290 K09264 - vvi:100261787 442.965