Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g299 ATGATGGTGATTACAAAGTTCTTTGCTTTGAAAGTAAACTATTATTTAAGAAACCAAAAGCTCACAAGCCAGGTTCATGAAATTGTTGGTCGTATCAATGGGCGATTTGGAACTCTCACTACCGTTCCAATACATCATTTGGATCGATCTCTTGACTTCCATGCATTATGTGCACTTTATGCTGTCACTGATGTAGCACTTGTTACATCTTTAAGGGATGGAATGAATCTTGTTAGCTATGAGTTTGTGGCCTGCCAAGCTTCAAAGAAAGGGGTTCTCATTCTAAGTGAGTTTGCAGGTGCTGCACAGTCTCTTGGTGCTGGTGCTATCTTGGTAAACCCATGGAATATCACAGAAGTTGCTGCTTCAATTGGCTATGCCTTGAATATGCCAGCTGACGAAAGAGAAAAAAGACACTGGCATAATTTCATGCATGTGACTACTCACACATCTCAAGAATGGGCATTGACCTTTGTAAGTGAACTCAATGATACCATTTTTGAAGCTCAGCTGAGGACAAGACAAGTTCCACCTTTACTTCCAACAAAAGATGCAATTGAACGATATCTGCAATCCAATAATCGATTGCTTATACTGGGCTTCAATTCTACATTAACCGAACCAGTAGACATCCCAGGTAGAAGAGGTGGGCAAATTAAAGAAATGGAGCTTAAATTGCACCCAGATTTGAAAGAACCCTTGAAGAAGCTTTGTGATGATCCGAAGACAACGGTTATTATTCTCAGTGGAAGCGACAGGGGGGTCCTGGACGATAATTTCAGTGAATACAACATGTGGTTGGCAGCTGAAAATGGGATGTTTTTACGTCTTACCACAGGAGAATGGATGACGACAATGCCAGATAATCTGAATATGGATTGGGTTGACAGTGTAAAGCATGTTTTTGAGTATTTTACTGAAAGAACACCTCGATCTCATTTTGAGCTTCGTGAGACTTCACTTGTGTGGAATTACAAGTATGCAGACATTGAATTTGGGAGGCTTCAAGCAAGAGATATGTTGCAGCATCTGTGGACAGGCCCAATCTCTAATGCGTCTGTTGATGTTGTGCAAGGTGGCCGATCTGTTGAAGTCCGAGCAGTGGGTGTTACAAAGGGTGCAGCTATTGATCGTATTTTAGGAGAAATAGTTCATAACAGGGGCATGAAGGCACCTATTGATTATGTCCTGTGCATTGGGCACTTTTTGGGGAAGGATGAAGACATCTATACATTTTTTGAGCCAGAACTTCCTTCTGAACCGGCAGCTGCAGCAAGAACCAAGGTAGTTGAACCTGTCAAAACATCTGCAACTAAGGTTTCAACCATTCTTGATCTCAAGGGTGACAATTACTTCTCCTGTGCTGTTGGACGGAAGCGATCAAAAGCCAGATATCTCCTTGGCTCATTAGATGATGTTGTTACGTTAATAAAGGATTTGGCAGAATTTTCAAGACCATGTTGA 1464 41.6 MMVITKFFALKVNYYLRNQKLTSQVHEIVGRINGRFGTLTTVPIHHLDRSLDFHALCALYAVTDVALVTSLRDGMNLVSYEFVACQASKKGVLILSEFAGAAQSLGAGAILVNPWNITEVAASIGYALNMPADEREKRHWHNFMHVTTHTSQEWALTFVSELNDTIFEAQLRTRQVPPLLPTKDAIERYLQSNNRLLILGFNSTLTEPVDIPGRRGGQIKEMELKLHPDLKEPLKKLCDDPKTTVIILSGSDRGVLDDNFSEYNMWLAAENGMFLRLTTGEWMTTMPDNLNMDWVDSVKHVFEYFTERTPRSHFELRETSLVWNYKYADIEFGRLQARDMLQHLWTGPISNASVDVVQGGRSVEVRAVGVTKGAAIDRILGEIVHNRGMKAPIDYVLCIGHFLGKDEDIYTFFEPELPSEPAAAARTKVVEPVKTSATKVSTILDLKGDNYFSCAVGRKRSKARYLLGSLDDVVTLIKDLAEFSRPC* 488
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3883060 3911610 + Vvi10g299 Vvi10g299 770898
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g299 487 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 18 422 IPR001830 GO:0003824|GO:0005992
Vvi10g299 487 Gene3D Glycogen Phosphorylase B; 10 147 - -
Vvi10g299 487 Pfam Trehalose-phosphatase 210 420 IPR003337 GO:0003824|GO:0005992
Vvi10g299 487 Gene3D - 335 486 IPR023214 -
Vvi10g299 487 Pfam Glycosyltransferase family 20 18 163 IPR001830 GO:0003824|GO:0005992
Vvi10g299 487 PANTHER BNAA02G18920D PROTEIN 18 422 - -
Vvi10g299 487 CDD HAD_TPP 196 474 - -
Vvi10g299 487 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 19 165 - -
Vvi10g299 487 SUPERFAMILY HAD-like 195 481 IPR036412 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi10g299 Vvi19g27 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g299 K16055 - vvi:100255459 912.138