Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g343 ATGGTTTATAAGTTCCATGATGATGATCATGGTGAAGTTGTGTCTGAAATCAGAAGATCCGATTTGGAGCCGTATTTGGGATTACATTATCCTGCAACAGATATCCCACAAGCTGCTCGGTTCTTGTTCAAACAGAATCGTGTTCGGATTATTTGTGATTGCAATGCAAAAGCAGTAAGGGTGATTCAAAGTGAGGAGCTAAAGCAACCCCTTTGTTTGGTCAACTCAACCCTTCGATCTCCCCATGGCTGCCACTTGCAGTACATGTTCAACATGGGCTGCATTGCCTCCTTGGCAATGGCGGTTGTTATCAATGGCAATGATGCAACAAAGCTTTGGGGATTGGTGGTATGCCACCATACTTCCCCTAGGTATGTTCCTTTTCCCCTTCGCTACGCTTGCGAATTCCTTATGCAGGCATTTGGGCTGCAGCTCTACATGGAGCTTCAATTGGCATCACAGTTGGCAGAGAAGAAGATCCTCAGGATGCAGACCTTATTATGTGACATGCTCCTTCGGGAAGCCCCATTAGGCATTGTGACACATTCTCCAAGTATAATGGATCTCCTGAAGTGTGATGGGGCTGCACTATACTATGGTGGGAGATGTTGGTTATTAGGTGTAACTCCCACCGAATCACAGGTAAAAGATATTGCTGAATGGCTCCTTACCGAACATGGGGATTCTACAGGACTGAGTACAGATAGTTTGGCTGATGCAGGATATCCTGGTGCTGCATTACTGGGTGATGCGGTTTGTGGCATGGCAACTGCAAGAATAACTTCAAAGGATTTCTTGTTATGGTTCAGGTCACACACTGCTAAGGAAGTTAAATGGGGAGGAGCTAAGCATCATCCAGAAGATAAAGATGATGGTGGTAGAATGCACCCAAGATCATCATTCAAAGCATTTCTTGAGGTGGTAAAAAGTAGAAGTTTGCCTTGGGAGGTTTCTGACATCAATGCTATTCACTCTTTACAGCTCATAATGAGAGATTCATTTCAGGACATTGAGGACAGTAGTGGTAAGGTGATGGTTCATACCCAAAAGTATGATTCTGAGATGCAAGGGTTGAATGAGCTTGGTTCTGTGGCATGTGAAATGGTCAAATTGATTGAGACAGCAACCGCTCCCATTTTTGGGGTCGATTCATCTGGTTGCATCAATGGATGGAATGCAAAAATTGCTGAATTGACAGGATTACAAGCTAAAGAAGCTATGGGTAAGTCCCTGGTTGATGAAATTGTTCATGAGGACTTGCGTGGAGCTGTTGACAATCTTCTATGCAGAGCTTTGCAAGGCAAGGAGGACAAGAATGTTGAGTTGAAATTGAAAAATTTTGGGCTAAATCAGCAAGATTCAGCGTTATACATTGTGGTCAATGCCTGCACAAGTAGAGATTACACAAACGATATTGTTGGGGTGTGCTTTGTGGGTCAAGACATCACATCTGAGAAAATTGTCATGGATAAATTCATCCGCTTGCAAGGGGATTACAAGGCCATTGTACAATGTCTTAATCCATTAATCCCACCTATATTTGCTTCTGATGGGAATGCTTGCTGTTCTGAATGGAACACATCCCTGGAAAAGCTAACTGGTTGTATGAGACATGAGGTTATAAGAAAAATGCTTCCAGGAGAAGTTTTTGGAGGTCTATGTCCATTGAAAAGTCAAGATACACTTACTAGATTTACGATTCTATTATACCAAGCAATAAGTGGTCAAGATACAGAGAAGTTCCCATTTGGGTTTTTTGATAAGAGTGGAAAACTTGTGGAGGTTCTCTTAACAGCTAATAAAAGAACTGATGCGAATGGGAATGTGATTGGGTGTTTCTGCTTCTTGCAGATTGATACACCTGACAAGCATCAGGGCTTGGGACACGGACCAGAGTATAGGGAGTGTTTTTCAAAATTTAAGGAGTTAGCTTATATAAGACAAGAGATGAAAAATCCTTTGAATGGAATTCGGTTTACCCACAAACTTTTGGAAACTACAGCTACCTCAGTTTACCAGAAACAATTTCTTGAAACTAGTGAGGCATGTGAAAGGCAGATGATGTCTATCATTGCAGATATAGATATGGGAATAATAGAAGAGGGCAGCATGGAGCTAAATGTGGAAGAGTTTCTATTGGGAAATGTTTTGGATGCTGTTGTCAGCCAAGTAATGATGTTGCTGAAGGAAAAGAAGTTACAGCTAGTTTGTGAGATTCCAGAGGAAATCAAAACACTTCCTCTTTCCGGTGATCAAATTAAGCTTCAGCAGGTCTTGTCTGATTTCTTGCATAATATAGTGCACCATGCACCATCTTCAGATGGCTGGATAGAAATCAAGATTTCAACTGGTTTAAAGATGATACAGGATTTTAATGAATTCGTCCATTTACAGTTCAGAATGACCCACATTGGCCAGGGCCTTCCTCCTGACCTAATCCAAGATATGTTTGAAGGAGGAGACCAGTGGAATACCCAGGAAGGCTTAGGGCTGAACCTGTCAAGGAAACTTCTCAGTGCAATGAATGGTCGCGTCCAATATGTCAGAGAGCATGGTAAATGTTACTTCCTTGTTGACATTGATCTGAAGAACAGGAGAGCAAGAGAAAAGGGGAAACAGATACAAGTAAGATGA 2634 41.99 MVYKFHDDDHGEVVSEIRRSDLEPYLGLHYPATDIPQAARFLFKQNRVRIICDCNAKAVRVIQSEELKQPLCLVNSTLRSPHGCHLQYMFNMGCIASLAMAVVINGNDATKLWGLVVCHHTSPRYVPFPLRYACEFLMQAFGLQLYMELQLASQLAEKKILRMQTLLCDMLLREAPLGIVTHSPSIMDLLKCDGAALYYGGRCWLLGVTPTESQVKDIAEWLLTEHGDSTGLSTDSLADAGYPGAALLGDAVCGMATARITSKDFLLWFRSHTAKEVKWGGAKHHPEDKDDGGRMHPRSSFKAFLEVVKSRSLPWEVSDINAIHSLQLIMRDSFQDIEDSSGKVMVHTQKYDSEMQGLNELGSVACEMVKLIETATAPIFGVDSSGCINGWNAKIAELTGLQAKEAMGKSLVDEIVHEDLRGAVDNLLCRALQGKEDKNVELKLKNFGLNQQDSALYIVVNACTSRDYTNDIVGVCFVGQDITSEKIVMDKFIRLQGDYKAIVQCLNPLIPPIFASDGNACCSEWNTSLEKLTGCMRHEVIRKMLPGEVFGGLCPLKSQDTLTRFTILLYQAISGQDTEKFPFGFFDKSGKLVEVLLTANKRTDANGNVIGCFCFLQIDTPDKHQGLGHGPEYRECFSKFKELAYIRQEMKNPLNGIRFTHKLLETTATSVYQKQFLETSEACERQMMSIIADIDMGIIEEGSMELNVEEFLLGNVLDAVVSQVMMLLKEKKLQLVCEIPEEIKTLPLSGDQIKLQQVLSDFLHNIVHHAPSSDGWIEIKISTGLKMIQDFNEFVHLQFRMTHIGQGLPPDLIQDMFEGGDQWNTQEGLGLNLSRKLLSAMNGRVQYVREHGKCYFLVDIDLKNRRAREKGKQIQVR* 878
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4672998 4683341 - Vvi10g343 Vvi10g343 770942

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g343 877 SUPERFAMILY GAF domain-like 157 335 - -
Vvi10g343 877 TIGRFAM sensory_box: PAS domain S-box protein 371 486 IPR000014 -
Vvi10g343 877 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 1 139 IPR016132 -
Vvi10g343 877 SMART HKATPase_4 750 864 IPR003594 -
Vvi10g343 877 CDD HATPase_Phy-like 750 862 IPR044767 -
Vvi10g343 877 ProSiteProfiles Histidine kinase domain profile. 645 864 IPR005467 -
Vvi10g343 877 Pfam GAF domain 18 149 IPR003018 GO:0005515
Vvi10g343 877 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 750 862 IPR003594 -
Vvi10g343 877 CDD PAS 509 617 IPR000014 -
Vvi10g343 877 ProSiteProfiles PAC domain profile. 438 494 IPR000700 -
Vvi10g343 877 PANTHER TWO-COMPONENT HISTIDINE KINASE 1 868 - -
Vvi10g343 877 Pfam His Kinase A (phospho-acceptor) domain 642 701 IPR003661 GO:0000155|GO:0007165
Vvi10g343 877 PANTHER PHYTOCHROME E 1 868 - -
Vvi10g343 877 CDD HisKA 643 694 IPR003661 GO:0000155|GO:0007165
Vvi10g343 877 SMART HisKA_10 638 702 IPR003661 GO:0000155|GO:0007165
Vvi10g343 877 ProSiteProfiles PAS repeat profile. 498 576 IPR000014 -
Vvi10g343 877 SUPERFAMILY PYP-like sensor domain (PAS domain) 512 616 IPR035965 -
Vvi10g343 877 Gene3D PAS domain 511 623 - -
Vvi10g343 877 Pfam Phytochrome region 162 335 IPR013515 GO:0006355|GO:0009584
Vvi10g343 877 Gene3D PAS domain 366 486 - -
Vvi10g343 877 ProSiteProfiles PAS repeat profile. 364 435 IPR000014 -
Vvi10g343 877 Gene3D - 1 152 IPR029016 -
Vvi10g343 877 PRINTS Phytochrome signature 79 100 IPR001294 GO:0006355|GO:0009584
Vvi10g343 877 PRINTS Phytochrome signature 179 199 IPR001294 GO:0006355|GO:0009584
Vvi10g343 877 PRINTS Phytochrome signature 264 283 IPR001294 GO:0006355|GO:0009584
Vvi10g343 877 PRINTS Phytochrome signature 297 315 IPR001294 GO:0006355|GO:0009584
Vvi10g343 877 PRINTS Phytochrome signature 367 383 IPR001294 GO:0006355|GO:0009584
Vvi10g343 877 PRINTS Phytochrome signature 386 401 IPR001294 GO:0006355|GO:0009584
Vvi10g343 877 PRINTS Phytochrome signature 460 477 IPR001294 GO:0006355|GO:0009584
Vvi10g343 877 PRINTS Phytochrome signature 480 500 IPR001294 GO:0006355|GO:0009584
Vvi10g343 877 SMART pas_2 366 433 IPR000014 -
Vvi10g343 877 SMART pas_2 500 566 IPR000014 -
Vvi10g343 877 Gene3D - 153 338 IPR043150 -
Vvi10g343 877 SUPERFAMILY GAF domain-like 1 145 - -
Vvi10g343 877 ProSitePatterns Phytochrome chromophore attachment site signature. 79 88 IPR013516 -
Vvi10g343 877 Gene3D - 681 856 IPR036890 -
Vvi10g343 877 SUPERFAMILY PYP-like sensor domain (PAS domain) 371 478 IPR035965 -
Vvi10g343 877 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 705 853 IPR036890 -
Vvi10g343 877 Pfam PAS fold 367 482 IPR013767 GO:0006355
Vvi10g343 877 Pfam PAS fold 498 617 IPR013767 GO:0006355
Vvi10g343 877 CDD PAS 375 482 IPR000014 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g343 K12123 PHYE; phytochrome E - vvi:100264019 1778.07
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi10g343 . . . . . . Bma14g00963 Bma01g01487 . Cmo18g00427 . . . . . Cpe09g00775 . . . . . . . . . . . . . . . . . . . . . Chy12g00013 . . . . . Bpe02g00962 . . . Sed01g2202 . . Cma13g00567 Cma18g00452 Car13g00449 Car18g00423 . Cpe20g00493 Bhi08g02111 Tan05g2567 Cmetu12g0178 Lac10g1014 Hepe07g1806 . . Cla03g00672 Cam03g0721 Cec03g0697 Cco03g0733 Clacu03g0719 Cmu03g1310 Cre03g1005 Lsi02g00857 Csa01g02269 . Cme12g01234
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vvi4g1138 . 5 1168 Histidine Kinase Gene Family AT2G17820 67.1 0.0e+00 1484.2
Vvi1g534 . 1 839 Histidine Kinase Gene Family AT2G01830 70.4 0.0e+00 1194.1
Vvi1g1264 . 87 1035 Histidine Kinase Gene Family AT2G01830 54.9 4.3e-282 968.0
Vvi12g685 . 287 1201 Histidine Kinase Gene Family AT2G01830 53.8 3.3e-274 941.8
Vvi4g656 . 1 802 Histidine Kinase Gene Family AT5G10720 56.3 1.4e-273 939.5
Vvi14g7 . 1 1120 Histidine Kinase Gene Family AT1G09570 81.7 0.0e+00 1856.3
Vvi10g343 . 1 862 Histidine Kinase Gene Family AT1G09570 52.1 4.3e-256 881.7
Vvi5g63 . 13 922 Histidine Kinase Gene Family AT2G18790 67.2 0.0e+00 1356.3
Vvi14g7 . 7 1054 Histidine Kinase Gene Family AT2G18790 52.5 0.0e+00 1100.1
Vvi10g343 . 1 810 Histidine Kinase Gene Family AT2G18790 63.2 1.1e-304 1043.1
Vvi14g7 . 9 1114 Histidine Kinase Gene Family AT5G35840 52.1 0.0e+00 1149.0
Vvi12g703 . 10 913 Histidine Kinase Gene Family AT5G35840 53.7 0.0e+00 1117.4
Vvi5g63 . 6 974 Histidine Kinase Gene Family AT4G16250 64.3 0.0e+00 1377.1
Vvi14g7 . 14 1115 Histidine Kinase Gene Family AT4G16250 52.6 0.0e+00 1148.7
Vvi10g343 . 1 862 Histidine Kinase Gene Family AT4G16250 61.3 0.0e+00 1079.7
Vvi10g343 . 1 863 Histidine Kinase Gene Family AT4G18130 66.6 0.0e+00 1158.3
Vvi5g63 . 46 979 Histidine Kinase Gene Family AT4G18130 52.2 4.3e-301 1031.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009148 1 1 1 2 1 1 2 1 1 1 1 1 2 1 1 1 1 0 2 1 1 1 1 1 1 1 1 2 1 1 34