Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi10g343 | ATGGTTTATAAGTTCCATGATGATGATCATGGTGAAGTTGTGTCTGAAATCAGAAGATCCGATTTGGAGCCGTATTTGGGATTACATTATCCTGCAACAGATATCCCACAAGCTGCTCGGTTCTTGTTCAAACAGAATCGTGTTCGGATTATTTGTGATTGCAATGCAAAAGCAGTAAGGGTGATTCAAAGTGAGGAGCTAAAGCAACCCCTTTGTTTGGTCAACTCAACCCTTCGATCTCCCCATGGCTGCCACTTGCAGTACATGTTCAACATGGGCTGCATTGCCTCCTTGGCAATGGCGGTTGTTATCAATGGCAATGATGCAACAAAGCTTTGGGGATTGGTGGTATGCCACCATACTTCCCCTAGGTATGTTCCTTTTCCCCTTCGCTACGCTTGCGAATTCCTTATGCAGGCATTTGGGCTGCAGCTCTACATGGAGCTTCAATTGGCATCACAGTTGGCAGAGAAGAAGATCCTCAGGATGCAGACCTTATTATGTGACATGCTCCTTCGGGAAGCCCCATTAGGCATTGTGACACATTCTCCAAGTATAATGGATCTCCTGAAGTGTGATGGGGCTGCACTATACTATGGTGGGAGATGTTGGTTATTAGGTGTAACTCCCACCGAATCACAGGTAAAAGATATTGCTGAATGGCTCCTTACCGAACATGGGGATTCTACAGGACTGAGTACAGATAGTTTGGCTGATGCAGGATATCCTGGTGCTGCATTACTGGGTGATGCGGTTTGTGGCATGGCAACTGCAAGAATAACTTCAAAGGATTTCTTGTTATGGTTCAGGTCACACACTGCTAAGGAAGTTAAATGGGGAGGAGCTAAGCATCATCCAGAAGATAAAGATGATGGTGGTAGAATGCACCCAAGATCATCATTCAAAGCATTTCTTGAGGTGGTAAAAAGTAGAAGTTTGCCTTGGGAGGTTTCTGACATCAATGCTATTCACTCTTTACAGCTCATAATGAGAGATTCATTTCAGGACATTGAGGACAGTAGTGGTAAGGTGATGGTTCATACCCAAAAGTATGATTCTGAGATGCAAGGGTTGAATGAGCTTGGTTCTGTGGCATGTGAAATGGTCAAATTGATTGAGACAGCAACCGCTCCCATTTTTGGGGTCGATTCATCTGGTTGCATCAATGGATGGAATGCAAAAATTGCTGAATTGACAGGATTACAAGCTAAAGAAGCTATGGGTAAGTCCCTGGTTGATGAAATTGTTCATGAGGACTTGCGTGGAGCTGTTGACAATCTTCTATGCAGAGCTTTGCAAGGCAAGGAGGACAAGAATGTTGAGTTGAAATTGAAAAATTTTGGGCTAAATCAGCAAGATTCAGCGTTATACATTGTGGTCAATGCCTGCACAAGTAGAGATTACACAAACGATATTGTTGGGGTGTGCTTTGTGGGTCAAGACATCACATCTGAGAAAATTGTCATGGATAAATTCATCCGCTTGCAAGGGGATTACAAGGCCATTGTACAATGTCTTAATCCATTAATCCCACCTATATTTGCTTCTGATGGGAATGCTTGCTGTTCTGAATGGAACACATCCCTGGAAAAGCTAACTGGTTGTATGAGACATGAGGTTATAAGAAAAATGCTTCCAGGAGAAGTTTTTGGAGGTCTATGTCCATTGAAAAGTCAAGATACACTTACTAGATTTACGATTCTATTATACCAAGCAATAAGTGGTCAAGATACAGAGAAGTTCCCATTTGGGTTTTTTGATAAGAGTGGAAAACTTGTGGAGGTTCTCTTAACAGCTAATAAAAGAACTGATGCGAATGGGAATGTGATTGGGTGTTTCTGCTTCTTGCAGATTGATACACCTGACAAGCATCAGGGCTTGGGACACGGACCAGAGTATAGGGAGTGTTTTTCAAAATTTAAGGAGTTAGCTTATATAAGACAAGAGATGAAAAATCCTTTGAATGGAATTCGGTTTACCCACAAACTTTTGGAAACTACAGCTACCTCAGTTTACCAGAAACAATTTCTTGAAACTAGTGAGGCATGTGAAAGGCAGATGATGTCTATCATTGCAGATATAGATATGGGAATAATAGAAGAGGGCAGCATGGAGCTAAATGTGGAAGAGTTTCTATTGGGAAATGTTTTGGATGCTGTTGTCAGCCAAGTAATGATGTTGCTGAAGGAAAAGAAGTTACAGCTAGTTTGTGAGATTCCAGAGGAAATCAAAACACTTCCTCTTTCCGGTGATCAAATTAAGCTTCAGCAGGTCTTGTCTGATTTCTTGCATAATATAGTGCACCATGCACCATCTTCAGATGGCTGGATAGAAATCAAGATTTCAACTGGTTTAAAGATGATACAGGATTTTAATGAATTCGTCCATTTACAGTTCAGAATGACCCACATTGGCCAGGGCCTTCCTCCTGACCTAATCCAAGATATGTTTGAAGGAGGAGACCAGTGGAATACCCAGGAAGGCTTAGGGCTGAACCTGTCAAGGAAACTTCTCAGTGCAATGAATGGTCGCGTCCAATATGTCAGAGAGCATGGTAAATGTTACTTCCTTGTTGACATTGATCTGAAGAACAGGAGAGCAAGAGAAAAGGGGAAACAGATACAAGTAAGATGA | 2634 | 41.99 | MVYKFHDDDHGEVVSEIRRSDLEPYLGLHYPATDIPQAARFLFKQNRVRIICDCNAKAVRVIQSEELKQPLCLVNSTLRSPHGCHLQYMFNMGCIASLAMAVVINGNDATKLWGLVVCHHTSPRYVPFPLRYACEFLMQAFGLQLYMELQLASQLAEKKILRMQTLLCDMLLREAPLGIVTHSPSIMDLLKCDGAALYYGGRCWLLGVTPTESQVKDIAEWLLTEHGDSTGLSTDSLADAGYPGAALLGDAVCGMATARITSKDFLLWFRSHTAKEVKWGGAKHHPEDKDDGGRMHPRSSFKAFLEVVKSRSLPWEVSDINAIHSLQLIMRDSFQDIEDSSGKVMVHTQKYDSEMQGLNELGSVACEMVKLIETATAPIFGVDSSGCINGWNAKIAELTGLQAKEAMGKSLVDEIVHEDLRGAVDNLLCRALQGKEDKNVELKLKNFGLNQQDSALYIVVNACTSRDYTNDIVGVCFVGQDITSEKIVMDKFIRLQGDYKAIVQCLNPLIPPIFASDGNACCSEWNTSLEKLTGCMRHEVIRKMLPGEVFGGLCPLKSQDTLTRFTILLYQAISGQDTEKFPFGFFDKSGKLVEVLLTANKRTDANGNVIGCFCFLQIDTPDKHQGLGHGPEYRECFSKFKELAYIRQEMKNPLNGIRFTHKLLETTATSVYQKQFLETSEACERQMMSIIADIDMGIIEEGSMELNVEEFLLGNVLDAVVSQVMMLLKEKKLQLVCEIPEEIKTLPLSGDQIKLQQVLSDFLHNIVHHAPSSDGWIEIKISTGLKMIQDFNEFVHLQFRMTHIGQGLPPDLIQDMFEGGDQWNTQEGLGLNLSRKLLSAMNGRVQYVREHGKCYFLVDIDLKNRRAREKGKQIQVR* | 878 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 4672998 | 4683341 | - | Vvi10g343 | Vvi10g343 | 770942 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi10g343 | 877 | SUPERFAMILY | GAF domain-like | 157 | 335 | - | - | |
Vvi10g343 | 877 | TIGRFAM | sensory_box: PAS domain S-box protein | 371 | 486 | IPR000014 | - | |
Vvi10g343 | 877 | ProSiteProfiles | Phytochrome chromophore attachment site domain profile. | 1 | 139 | IPR016132 | - | |
Vvi10g343 | 877 | SMART | HKATPase_4 | 750 | 864 | IPR003594 | - | |
Vvi10g343 | 877 | CDD | HATPase_Phy-like | 750 | 862 | IPR044767 | - | |
Vvi10g343 | 877 | ProSiteProfiles | Histidine kinase domain profile. | 645 | 864 | IPR005467 | - | |
Vvi10g343 | 877 | Pfam | GAF domain | 18 | 149 | IPR003018 | GO:0005515 | |
Vvi10g343 | 877 | Pfam | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase | 750 | 862 | IPR003594 | - | |
Vvi10g343 | 877 | CDD | PAS | 509 | 617 | IPR000014 | - | |
Vvi10g343 | 877 | ProSiteProfiles | PAC domain profile. | 438 | 494 | IPR000700 | - | |
Vvi10g343 | 877 | PANTHER | TWO-COMPONENT HISTIDINE KINASE | 1 | 868 | - | - | |
Vvi10g343 | 877 | Pfam | His Kinase A (phospho-acceptor) domain | 642 | 701 | IPR003661 | GO:0000155|GO:0007165 | |
Vvi10g343 | 877 | PANTHER | PHYTOCHROME E | 1 | 868 | - | - | |
Vvi10g343 | 877 | CDD | HisKA | 643 | 694 | IPR003661 | GO:0000155|GO:0007165 | |
Vvi10g343 | 877 | SMART | HisKA_10 | 638 | 702 | IPR003661 | GO:0000155|GO:0007165 | |
Vvi10g343 | 877 | ProSiteProfiles | PAS repeat profile. | 498 | 576 | IPR000014 | - | |
Vvi10g343 | 877 | SUPERFAMILY | PYP-like sensor domain (PAS domain) | 512 | 616 | IPR035965 | - | |
Vvi10g343 | 877 | Gene3D | PAS domain | 511 | 623 | - | - | |
Vvi10g343 | 877 | Pfam | Phytochrome region | 162 | 335 | IPR013515 | GO:0006355|GO:0009584 | |
Vvi10g343 | 877 | Gene3D | PAS domain | 366 | 486 | - | - | |
Vvi10g343 | 877 | ProSiteProfiles | PAS repeat profile. | 364 | 435 | IPR000014 | - | |
Vvi10g343 | 877 | Gene3D | - | 1 | 152 | IPR029016 | - | |
Vvi10g343 | 877 | PRINTS | Phytochrome signature | 79 | 100 | IPR001294 | GO:0006355|GO:0009584 | |
Vvi10g343 | 877 | PRINTS | Phytochrome signature | 179 | 199 | IPR001294 | GO:0006355|GO:0009584 | |
Vvi10g343 | 877 | PRINTS | Phytochrome signature | 264 | 283 | IPR001294 | GO:0006355|GO:0009584 | |
Vvi10g343 | 877 | PRINTS | Phytochrome signature | 297 | 315 | IPR001294 | GO:0006355|GO:0009584 | |
Vvi10g343 | 877 | PRINTS | Phytochrome signature | 367 | 383 | IPR001294 | GO:0006355|GO:0009584 | |
Vvi10g343 | 877 | PRINTS | Phytochrome signature | 386 | 401 | IPR001294 | GO:0006355|GO:0009584 | |
Vvi10g343 | 877 | PRINTS | Phytochrome signature | 460 | 477 | IPR001294 | GO:0006355|GO:0009584 | |
Vvi10g343 | 877 | PRINTS | Phytochrome signature | 480 | 500 | IPR001294 | GO:0006355|GO:0009584 | |
Vvi10g343 | 877 | SMART | pas_2 | 366 | 433 | IPR000014 | - | |
Vvi10g343 | 877 | SMART | pas_2 | 500 | 566 | IPR000014 | - | |
Vvi10g343 | 877 | Gene3D | - | 153 | 338 | IPR043150 | - | |
Vvi10g343 | 877 | SUPERFAMILY | GAF domain-like | 1 | 145 | - | - | |
Vvi10g343 | 877 | ProSitePatterns | Phytochrome chromophore attachment site signature. | 79 | 88 | IPR013516 | - | |
Vvi10g343 | 877 | Gene3D | - | 681 | 856 | IPR036890 | - | |
Vvi10g343 | 877 | SUPERFAMILY | PYP-like sensor domain (PAS domain) | 371 | 478 | IPR035965 | - | |
Vvi10g343 | 877 | SUPERFAMILY | ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase | 705 | 853 | IPR036890 | - | |
Vvi10g343 | 877 | Pfam | PAS fold | 367 | 482 | IPR013767 | GO:0006355 | |
Vvi10g343 | 877 | Pfam | PAS fold | 498 | 617 | IPR013767 | GO:0006355 | |
Vvi10g343 | 877 | CDD | PAS | 375 | 482 | IPR000014 | - |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi10g343 | K12123 | - | vvi:100264019 | 1778.07 |