Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g343 ATGGTTTATAAGTTCCATGATGATGATCATGGTGAAGTTGTGTCTGAAATCAGAAGATCCGATTTGGAGCCGTATTTGGGATTACATTATCCTGCAACAGATATCCCACAAGCTGCTCGGTTCTTGTTCAAACAGAATCGTGTTCGGATTATTTGTGATTGCAATGCAAAAGCAGTAAGGGTGATTCAAAGTGAGGAGCTAAAGCAACCCCTTTGTTTGGTCAACTCAACCCTTCGATCTCCCCATGGCTGCCACTTGCAGTACATGTTCAACATGGGCTGCATTGCCTCCTTGGCAATGGCGGTTGTTATCAATGGCAATGATGCAACAAAGCTTTGGGGATTGGTGGTATGCCACCATACTTCCCCTAGGTATGTTCCTTTTCCCCTTCGCTACGCTTGCGAATTCCTTATGCAGGCATTTGGGCTGCAGCTCTACATGGAGCTTCAATTGGCATCACAGTTGGCAGAGAAGAAGATCCTCAGGATGCAGACCTTATTATGTGACATGCTCCTTCGGGAAGCCCCATTAGGCATTGTGACACATTCTCCAAGTATAATGGATCTCCTGAAGTGTGATGGGGCTGCACTATACTATGGTGGGAGATGTTGGTTATTAGGTGTAACTCCCACCGAATCACAGGTAAAAGATATTGCTGAATGGCTCCTTACCGAACATGGGGATTCTACAGGACTGAGTACAGATAGTTTGGCTGATGCAGGATATCCTGGTGCTGCATTACTGGGTGATGCGGTTTGTGGCATGGCAACTGCAAGAATAACTTCAAAGGATTTCTTGTTATGGTTCAGGTCACACACTGCTAAGGAAGTTAAATGGGGAGGAGCTAAGCATCATCCAGAAGATAAAGATGATGGTGGTAGAATGCACCCAAGATCATCATTCAAAGCATTTCTTGAGGTGGTAAAAAGTAGAAGTTTGCCTTGGGAGGTTTCTGACATCAATGCTATTCACTCTTTACAGCTCATAATGAGAGATTCATTTCAGGACATTGAGGACAGTAGTGGTAAGGTGATGGTTCATACCCAAAAGTATGATTCTGAGATGCAAGGGTTGAATGAGCTTGGTTCTGTGGCATGTGAAATGGTCAAATTGATTGAGACAGCAACCGCTCCCATTTTTGGGGTCGATTCATCTGGTTGCATCAATGGATGGAATGCAAAAATTGCTGAATTGACAGGATTACAAGCTAAAGAAGCTATGGGTAAGTCCCTGGTTGATGAAATTGTTCATGAGGACTTGCGTGGAGCTGTTGACAATCTTCTATGCAGAGCTTTGCAAGGCAAGGAGGACAAGAATGTTGAGTTGAAATTGAAAAATTTTGGGCTAAATCAGCAAGATTCAGCGTTATACATTGTGGTCAATGCCTGCACAAGTAGAGATTACACAAACGATATTGTTGGGGTGTGCTTTGTGGGTCAAGACATCACATCTGAGAAAATTGTCATGGATAAATTCATCCGCTTGCAAGGGGATTACAAGGCCATTGTACAATGTCTTAATCCATTAATCCCACCTATATTTGCTTCTGATGGGAATGCTTGCTGTTCTGAATGGAACACATCCCTGGAAAAGCTAACTGGTTGTATGAGACATGAGGTTATAAGAAAAATGCTTCCAGGAGAAGTTTTTGGAGGTCTATGTCCATTGAAAAGTCAAGATACACTTACTAGATTTACGATTCTATTATACCAAGCAATAAGTGGTCAAGATACAGAGAAGTTCCCATTTGGGTTTTTTGATAAGAGTGGAAAACTTGTGGAGGTTCTCTTAACAGCTAATAAAAGAACTGATGCGAATGGGAATGTGATTGGGTGTTTCTGCTTCTTGCAGATTGATACACCTGACAAGCATCAGGGCTTGGGACACGGACCAGAGTATAGGGAGTGTTTTTCAAAATTTAAGGAGTTAGCTTATATAAGACAAGAGATGAAAAATCCTTTGAATGGAATTCGGTTTACCCACAAACTTTTGGAAACTACAGCTACCTCAGTTTACCAGAAACAATTTCTTGAAACTAGTGAGGCATGTGAAAGGCAGATGATGTCTATCATTGCAGATATAGATATGGGAATAATAGAAGAGGGCAGCATGGAGCTAAATGTGGAAGAGTTTCTATTGGGAAATGTTTTGGATGCTGTTGTCAGCCAAGTAATGATGTTGCTGAAGGAAAAGAAGTTACAGCTAGTTTGTGAGATTCCAGAGGAAATCAAAACACTTCCTCTTTCCGGTGATCAAATTAAGCTTCAGCAGGTCTTGTCTGATTTCTTGCATAATATAGTGCACCATGCACCATCTTCAGATGGCTGGATAGAAATCAAGATTTCAACTGGTTTAAAGATGATACAGGATTTTAATGAATTCGTCCATTTACAGTTCAGAATGACCCACATTGGCCAGGGCCTTCCTCCTGACCTAATCCAAGATATGTTTGAAGGAGGAGACCAGTGGAATACCCAGGAAGGCTTAGGGCTGAACCTGTCAAGGAAACTTCTCAGTGCAATGAATGGTCGCGTCCAATATGTCAGAGAGCATGGTAAATGTTACTTCCTTGTTGACATTGATCTGAAGAACAGGAGAGCAAGAGAAAAGGGGAAACAGATACAAGTAAGATGA 2634 41.99 MVYKFHDDDHGEVVSEIRRSDLEPYLGLHYPATDIPQAARFLFKQNRVRIICDCNAKAVRVIQSEELKQPLCLVNSTLRSPHGCHLQYMFNMGCIASLAMAVVINGNDATKLWGLVVCHHTSPRYVPFPLRYACEFLMQAFGLQLYMELQLASQLAEKKILRMQTLLCDMLLREAPLGIVTHSPSIMDLLKCDGAALYYGGRCWLLGVTPTESQVKDIAEWLLTEHGDSTGLSTDSLADAGYPGAALLGDAVCGMATARITSKDFLLWFRSHTAKEVKWGGAKHHPEDKDDGGRMHPRSSFKAFLEVVKSRSLPWEVSDINAIHSLQLIMRDSFQDIEDSSGKVMVHTQKYDSEMQGLNELGSVACEMVKLIETATAPIFGVDSSGCINGWNAKIAELTGLQAKEAMGKSLVDEIVHEDLRGAVDNLLCRALQGKEDKNVELKLKNFGLNQQDSALYIVVNACTSRDYTNDIVGVCFVGQDITSEKIVMDKFIRLQGDYKAIVQCLNPLIPPIFASDGNACCSEWNTSLEKLTGCMRHEVIRKMLPGEVFGGLCPLKSQDTLTRFTILLYQAISGQDTEKFPFGFFDKSGKLVEVLLTANKRTDANGNVIGCFCFLQIDTPDKHQGLGHGPEYRECFSKFKELAYIRQEMKNPLNGIRFTHKLLETTATSVYQKQFLETSEACERQMMSIIADIDMGIIEEGSMELNVEEFLLGNVLDAVVSQVMMLLKEKKLQLVCEIPEEIKTLPLSGDQIKLQQVLSDFLHNIVHHAPSSDGWIEIKISTGLKMIQDFNEFVHLQFRMTHIGQGLPPDLIQDMFEGGDQWNTQEGLGLNLSRKLLSAMNGRVQYVREHGKCYFLVDIDLKNRRAREKGKQIQVR* 878
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
10 4672998 4683341 - Vvi10g343 Vvi10g343 770942
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g343 877 SUPERFAMILY GAF domain-like 157 335 - -
Vvi10g343 877 TIGRFAM sensory_box: PAS domain S-box protein 371 486 IPR000014 -
Vvi10g343 877 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 1 139 IPR016132 -
Vvi10g343 877 SMART HKATPase_4 750 864 IPR003594 -
Vvi10g343 877 CDD HATPase_Phy-like 750 862 IPR044767 -
Vvi10g343 877 ProSiteProfiles Histidine kinase domain profile. 645 864 IPR005467 -
Vvi10g343 877 Pfam GAF domain 18 149 IPR003018 GO:0005515
Vvi10g343 877 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 750 862 IPR003594 -
Vvi10g343 877 CDD PAS 509 617 IPR000014 -
Vvi10g343 877 ProSiteProfiles PAC domain profile. 438 494 IPR000700 -
Vvi10g343 877 PANTHER TWO-COMPONENT HISTIDINE KINASE 1 868 - -
Vvi10g343 877 Pfam His Kinase A (phospho-acceptor) domain 642 701 IPR003661 GO:0000155|GO:0007165
Vvi10g343 877 PANTHER PHYTOCHROME E 1 868 - -
Vvi10g343 877 CDD HisKA 643 694 IPR003661 GO:0000155|GO:0007165
Vvi10g343 877 SMART HisKA_10 638 702 IPR003661 GO:0000155|GO:0007165
Vvi10g343 877 ProSiteProfiles PAS repeat profile. 498 576 IPR000014 -
Vvi10g343 877 SUPERFAMILY PYP-like sensor domain (PAS domain) 512 616 IPR035965 -
Vvi10g343 877 Gene3D PAS domain 511 623 - -
Vvi10g343 877 Pfam Phytochrome region 162 335 IPR013515 GO:0006355|GO:0009584
Vvi10g343 877 Gene3D PAS domain 366 486 - -
Vvi10g343 877 ProSiteProfiles PAS repeat profile. 364 435 IPR000014 -
Vvi10g343 877 Gene3D - 1 152 IPR029016 -
Vvi10g343 877 PRINTS Phytochrome signature 79 100 IPR001294 GO:0006355|GO:0009584
Vvi10g343 877 PRINTS Phytochrome signature 179 199 IPR001294 GO:0006355|GO:0009584
Vvi10g343 877 PRINTS Phytochrome signature 264 283 IPR001294 GO:0006355|GO:0009584
Vvi10g343 877 PRINTS Phytochrome signature 297 315 IPR001294 GO:0006355|GO:0009584
Vvi10g343 877 PRINTS Phytochrome signature 367 383 IPR001294 GO:0006355|GO:0009584
Vvi10g343 877 PRINTS Phytochrome signature 386 401 IPR001294 GO:0006355|GO:0009584
Vvi10g343 877 PRINTS Phytochrome signature 460 477 IPR001294 GO:0006355|GO:0009584
Vvi10g343 877 PRINTS Phytochrome signature 480 500 IPR001294 GO:0006355|GO:0009584
Vvi10g343 877 SMART pas_2 366 433 IPR000014 -
Vvi10g343 877 SMART pas_2 500 566 IPR000014 -
Vvi10g343 877 Gene3D - 153 338 IPR043150 -
Vvi10g343 877 SUPERFAMILY GAF domain-like 1 145 - -
Vvi10g343 877 ProSitePatterns Phytochrome chromophore attachment site signature. 79 88 IPR013516 -
Vvi10g343 877 Gene3D - 681 856 IPR036890 -
Vvi10g343 877 SUPERFAMILY PYP-like sensor domain (PAS domain) 371 478 IPR035965 -
Vvi10g343 877 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 705 853 IPR036890 -
Vvi10g343 877 Pfam PAS fold 367 482 IPR013767 GO:0006355
Vvi10g343 877 Pfam PAS fold 498 617 IPR013767 GO:0006355
Vvi10g343 877 CDD PAS 375 482 IPR000014 -
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g343 K12123 - vvi:100264019 1778.07