Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g356 ATGGACGAGCCCCTACTCCCTTACTTGAGTCCAAGGAAAAGCCGCCCATCTCCCCTCTTTCCTCTCCCTGAAGAGGACGAAGTGGCTCTCCCTCTCACCCCTTCTGAGTTCAAAGACCGTCTCATCTTCGGCCCTTCTTCTTCATCCCCCAGCGACTCTTCTCCTCTTCTCATCGACGCCCTAACCCTAACCATAAACTCCCCCAAGACCTCCTCTTCCATTGACCAAGACCCACTCTTACAGCCCCAACTACAACCATGGTTGGTCGACCCCCAATCCAATTGGCCCAAAACCAATCTCCATCGCTCCAAAACCAATCTCCATCGCTCCAAAACCGCCCCCGCCATGGCTGTCATCAACGATTTCCAACACCCTTCTGGGCCCAGACCCCAATTCAGGTCGCCCTCCATTAGAATTATCTTCTTAGGAGGGAGAATGAGGATTCGGATGAAAGTGGCTTTAGCATTGGGGGTTGTGGTTCTTTGTATTGGAATTGGTGTGGGTGTTATGCATTTTGTGGAGGAGCTTGACTGGTTGGATTCATTTTATCTCTCTGTCATGTCAGTTACCACAGTTGGATATGGGGATCGGGCATTTAAGTCTATGCCCGGCCGCATTTTTGCATCAATTTGGTTGCTTGTGTCAACACTTGCTGTTGCTAGAGCATTTCTTTACTTGGCAGAGGCAAGAGTTGATAAGCGGCATAGGAAGATGGCAAAATGGGTGCTTGGTCAGGACATGACTGTTGCTGAGTTTCTTGCTGCTGACATTGACAACAATGGTTTTGTGAGTAAATCAGAATATGTCATATACAAGCTCAAGGAGCTGGGAAAGGTATCTGAGAAAGACATTTCGCAGATCTGTAACAAGTTTGACAGGCTAGACAGTGGCAACTGTGGAAAGATAACTCTTGCTGATCTCATGGAGAACCATCACTGA 939 48.35 MDEPLLPYLSPRKSRPSPLFPLPEEDEVALPLTPSEFKDRLIFGPSSSSPSDSSPLLIDALTLTINSPKTSSSIDQDPLLQPQLQPWLVDPQSNWPKTNLHRSKTNLHRSKTAPAMAVINDFQHPSGPRPQFRSPSIRIIFLGGRMRIRMKVALALGVVVLCIGIGVGVMHFVEELDWLDSFYLSVMSVTTVGYGDRAFKSMPGRIFASIWLLVSTLAVARAFLYLAEARVDKRHRKMAKWVLGQDMTVAEFLAADIDNNGFVSKSEYVIYKLKELGKVSEKDISQICNKFDRLDSGNCGKITLADLMENHH* 313
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4878472 4890234 + Vvi10g356 Vvi10g356 770955
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g356 312 Gene3D - 220 312 - -
Vvi10g356 312 SUPERFAMILY EF-hand 251 308 IPR011992 -
Vvi10g356 312 MobiDBLite consensus disorder prediction 1 25 - -
Vvi10g356 312 SUPERFAMILY Voltage-gated potassium channels 142 249 - -
Vvi10g356 312 Pfam Ion channel 158 227 IPR013099 -
Vvi10g356 312 ProSitePatterns EF-hand calcium-binding domain. 256 268 IPR018247 -
Vvi10g356 312 Gene3D - 157 219 - -
Vvi10g356 312 PANTHER TWO-PORE POTASSIUM CHANNEL 3 86 137 - -
Vvi10g356 312 PANTHER TWO-PORE POTASSIUM CHANNEL 3 144 307 - -
Vvi10g356 312 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 144 307 IPR003280 GO:0005267|GO:0016020|GO:0071805
Vvi10g356 312 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 86 137 IPR003280 GO:0005267|GO:0016020|GO:0071805
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi10g356 Vvi12g41 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g356 K05389 - vvi:100262340 322.398