Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g357 ATGTCTGATGAGCCAAGAGATCTCTACTACCATGACCCATTCCATGATGATCGACATGGAATCATAGGGAACACTGGTTTTTCCTTCTCTGCCATTAATGATTCCAAAGCTGATTCTTCCATGAGAGCTGCTCCTTCCCCTCCCAATCTACAAGGCTTTGATCCTCCATACATGAGCTTCACCGACTGTCTTAATGGATCTCTGGACTATAATTCACTCACAACAGCCTTTGGCTTGTCACCTTCATCCTCAGAAGCATTTTCTCCCGTTGAAGGCAATCATAAGCCAGTCGCAAACCTCGGAGATTTAGGTGCCAGTGGTGAAATTGCGGGCACTCCTAACTCCTCCATCTCTTCCTCTTCTACTGAGGCCGGCGCTGAAGAGGATTCAAGCAAGAGTAAGAAGGACCGGCAGGCCAAAGTGTCTGAATTAGACGGAGGGGATGGCTCAAAGAAAGTGAACAAGCCCAAGAAGAAGGCAGAGAAAAGGCAAAGAGAGCCACGGTTCGCCTTCATGACTAAGAGTGAGGTCGATCATCTAGAGGATGGATATAGATGGAGAAAGTATGGACAGAAAGCTGTCAAGAATAGCCCTTTTCCAAGAAGCTACTATCGGTGCACTACTCAGAAGTGCACGGTGAAGAAACGAGTGGAGAGATCCTTCCAGGATCCATCGACAGTGATTACAACATATGAAGGCCAGCACAACCATCAGATACCGGTAACGCTGCGAGGGAATGCTGGCGGAATGCTACCACCTTCTGTGTTAACACCAGGACAGATGGGAGGGCCAGGGTTTCCTCAAGAGCTGTTTTTTCAGATGGCTTCTCCCATGAACAATCTCAGTGCTGCAGGCTCTTTCTACCCACAGGGGCTAACCCCTTTTCAGCAGCTGCAGTTTCATGACTATGGGCTCTTGCAAGATGTGGTTCCCTCCATGATTCACAAACAGGAGCCATGA 960 48.44 MSDEPRDLYYHDPFHDDRHGIIGNTGFSFSAINDSKADSSMRAAPSPPNLQGFDPPYMSFTDCLNGSLDYNSLTTAFGLSPSSSEAFSPVEGNHKPVANLGDLGASGEIAGTPNSSISSSSTEAGAEEDSSKSKKDRQAKVSELDGGDGSKKVNKPKKKAEKRQREPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTTQKCTVKKRVERSFQDPSTVITTYEGQHNHQIPVTLRGNAGGMLPPSVLTPGQMGGPGFPQELFFQMASPMNNLSAAGSFYPQGLTPFQQLQFHDYGLLQDVVPSMIHKQEP* 320
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4894475 4896340 + Vvi10g357 Vvi10g357 770956
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g357 319 SMART WRKY_cls 180 239 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi10g357 319 MobiDBLite consensus disorder prediction 81 174 - -
Vvi10g357 319 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 1 310 IPR044810 GO:0003700
Vvi10g357 319 PANTHER WRKY TRANSCRIPTION FACTOR 81 1 310 - -
Vvi10g357 319 Pfam WRKY DNA -binding domain 181 238 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi10g357 319 ProSiteProfiles WRKY domain profile. 175 240 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi10g357 319 MobiDBLite consensus disorder prediction 109 126 - -
Vvi10g357 319 MobiDBLite consensus disorder prediction 127 155 - -
Vvi10g357 319 SUPERFAMILY WRKY DNA-binding domain 172 240 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi10g357 319 Gene3D WRKY domain 165 241 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi10g357 Vvi12g44 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13663 PF03106 WRKY 7.10E-26 CL0274 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g357 - - vvi:100257231 644.81