Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g367 ATGGTGTCTGAAAGAGTCAGTTTAATCCTATTCCTGATTTGTTCATTTCTAGTACTGGTACCACTAGTTCTAACCATGGAGCCAAGCTTAGAAGTTGAACATGAGGCCTTGAAGGCCTTTAAGAATTCAGTTGCTGACGACCCCTTTGGAGCCCTTGCAGATTGGAGTGAAGCCAACCATCACTGCAATTGGTCTGGAATCACATGTGACCTTTCATCCAATCATGTCATATCGGTCTCGCTGATGGAGAAGCAGCTTGCAGGTCAGATCTCTCCATTCCTTGGAAACATTTCCATCCTCCAGGTTCTAGACTTGAAATTGAATCTTTTCCAAAATTCTCTTTCTGGATCAATTCCACCAGAACTAGGAAACCTTAGAAATCTGCAGTCATTAGACTTGGGGAGTAACTTCTTGGAAGGAAGCATCCCCAAAAGCATTTGCAACTGCACTGCCTTGTTGGGACTTGGCATCATCTTCAACAATCTCACAGGTACCATCCCAACAGACATTGGAAATTTAGCTAATCTTCAAATCCTTGTACTATATAGCAACAATATTATTGGTCCTATACCAGTTTCCATAGGTAAGTTGGGAGATTTGCAATCTCTAGACCTAAGTATCAACCAATTGTCTGGTGTAATGCCTCCAGAGATCGGGAACTTATCGAACTTAGAATATCTTCAATTGTTTGAGAATCACCTTTCTGGAAAAATCCCATCAGAACTGGGGCAGTGTAAGAAGCTGATCTATCTGAACTTGTACAGCAACCAATTTACAGGAGGCATTCCTTCTGAGCTAGGAAACTTGGTCCAATCACTGCAGGTACTAACTTTGCATTCAAATAAGTTCACTGGGAAAATCCCTGCACAGATAACCAACTTGACAAACTTGACAATTTTGTCAATGAGCTTCAACTTCCTCACAGGGGAGCTTCCATCCAATATCGGATCCCTTCATAATTTGAAGAACCTGACCGTGCACAACAACCTTCTAGAGGGATCCATTCCATCTAGTATCACCAATTGCACCCATCTTGTCAACATCGGTTTAGCTTATAATATGATAACAGGGGAAATTCCACAAGGTTTGGGACAGTTGCCGAATCTTACTTTCCTTGGTTTAGGGGTTAACAAAATGTCGGGGAACATTCCTGACGACCTCTTCAATTGCTCAAATCTGGCTATCCTAGATTTGGCCAGGAACAATTTCATAGGGCCTATCCCACCTGAGATTGGCAATTTAACTCAATTGTTCTCCTTACAGCTGAATGGGAATAGTTTGTCAGGCACAATGGTCCAGGTCGTAGATATCTTGAACCTTTCAAGAAATAATTTAAATGGTGGACTACCTGGAAGCTTAGCGAATATGAAGAATCTAAGCTCTCTGGACCTTTCTCAGAACAAGTTCAAGGGCATGATCCCGGAGAGTTATGCAAATATTTCCACCTTGAAGCAGCTGAATCTTTCTTTCAATCAACTGGAAGGTCGTAGCCATTTAGCTGCTTCTCATCGATTCTCCAAGAAAGCTACCGGCTTCTTTAGTGCAGAAAACGTCATTGGGGCCAGCACTTTGAGTACGGTATACAAGGGCAGAACGGACGATGGGAAGATTGTAGCCGTAAAGAAATTGAATTTGCAACAGTTCTCTGCTGAGGCTGATAAGTGCTTCAATAGAGAAGTGAAGACCCTGAGCCGACTCAGGCACAGAAACCTCGTAAAGGTACTTGGGTATGCTTGGGAAAGTGGAAAAATAAAGGCTCTAGTTCTGGAATACATGGAGAAGGGGAACTTGGACAGCATTATACATGAACCAGGGGTGGATCCTTCAAGGTGGACTTTATTGGAGAGAATCAATGTTTGTATTTCCATTGCAAGGGGGCTGGTTTACTTGCATTCAGGGTATGATTTCCCCATTGTCCACTGTGACTTGAAGCCTTCTAATGTTCTTTTGGATGGAGATTTGGAGGCCCATGTGAGCGATTTTGGAACAGCTCGAGTTCTGGGTGTTCATCTCCAGGATGGAAGCAGTGTTTCCTCATCATCAGCATTTGAAGGCACAATCGGATACTTGGCACCAGAGTTCGCATACATGAGGGAGCTCACAACCAAAGTCGATGTGTTCAGCTTTGGGATCATAGTAATGGAGTTCCTAACAAAAAGAAGGCCAACAGGACTGGCAGCAGAGGATGGCTTGCCATTGACCTTGCGTCAGCTGCCTGGGGATCGACCCGACATGAATGAGGTGCTGTCCAGTCTTTTGAAGCTAGGAGCAAAGATACCACCTCCATTACCATCATCATCATGA 2304 43.62 MVSERVSLILFLICSFLVLVPLVLTMEPSLEVEHEALKAFKNSVADDPFGALADWSEANHHCNWSGITCDLSSNHVISVSLMEKQLAGQISPFLGNISILQVLDLKLNLFQNSLSGSIPPELGNLRNLQSLDLGSNFLEGSIPKSICNCTALLGLGIIFNNLTGTIPTDIGNLANLQILVLYSNNIIGPIPVSIGKLGDLQSLDLSINQLSGVMPPEIGNLSNLEYLQLFENHLSGKIPSELGQCKKLIYLNLYSNQFTGGIPSELGNLVQSLQVLTLHSNKFTGKIPAQITNLTNLTILSMSFNFLTGELPSNIGSLHNLKNLTVHNNLLEGSIPSSITNCTHLVNIGLAYNMITGEIPQGLGQLPNLTFLGLGVNKMSGNIPDDLFNCSNLAILDLARNNFIGPIPPEIGNLTQLFSLQLNGNSLSGTMVQVVDILNLSRNNLNGGLPGSLANMKNLSSLDLSQNKFKGMIPESYANISTLKQLNLSFNQLEGRSHLAASHRFSKKATGFFSAENVIGASTLSTVYKGRTDDGKIVAVKKLNLQQFSAEADKCFNREVKTLSRLRHRNLVKVLGYAWESGKIKALVLEYMEKGNLDSIIHEPGVDPSRWTLLERINVCISIARGLVYLHSGYDFPIVHCDLKPSNVLLDGDLEAHVSDFGTARVLGVHLQDGSSVSSSSAFEGTIGYLAPEFAYMRELTTKVDVFSFGIIVMEFLTKRRPTGLAAEDGLPLTLRQLPGDRPDMNEVLSSLLKLGAKIPPPLPSSS* 768
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5029578 5033522 - Vvi10g367 Vvi10g367 770966
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g367 767 SUPERFAMILY Protein kinase-like (PK-like) 497 752 IPR011009 -
Vvi10g367 767 Gene3D Ribonuclease Inhibitor 270 505 IPR032675 -
Vvi10g367 767 Pfam Protein kinase domain 515 724 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g367 767 Pfam Leucine rich repeat 437 493 IPR001611 GO:0005515
Vvi10g367 767 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 107 183 - -
Vvi10g367 767 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 147 271 - -
Vvi10g367 767 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 11 110 - -
Vvi10g367 767 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 302 431 - -
Vvi10g367 767 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 271 312 - -
Vvi10g367 767 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 507 738 - -
Vvi10g367 767 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 433 496 - -
Vvi10g367 767 ProSiteProfiles Protein kinase domain profile. 513 767 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g367 767 SMART serkin_6 513 763 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g367 767 Gene3D Transferase(Phosphotransferase) domain 1 592 759 - -
Vvi10g367 767 Pfam Leucine Rich Repeat 127 149 IPR001611 GO:0005515
Vvi10g367 767 ProSitePatterns Serine/Threonine protein kinases active-site signature. 638 650 IPR008271 GO:0004672|GO:0006468
Vvi10g367 767 PRINTS Leucine-rich repeat signature 200 213 - -
Vvi10g367 767 PRINTS Leucine-rich repeat signature 456 469 - -
Vvi10g367 767 Gene3D Phosphorylase Kinase; domain 1 506 591 - -
Vvi10g367 767 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE FLS2 302 431 - -
Vvi10g367 767 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE FLS2 433 496 - -
Vvi10g367 767 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE FLS2 107 183 - -
Vvi10g367 767 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE FLS2 507 738 - -
Vvi10g367 767 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE FLS2 271 312 - -
Vvi10g367 767 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE FLS2 11 110 - -
Vvi10g367 767 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE FLS2 147 271 - -
Vvi10g367 767 SMART LRR_typ_2 197 220 IPR003591 -
Vvi10g367 767 SMART LRR_typ_2 456 479 IPR003591 -
Vvi10g367 767 SMART LRR_typ_2 318 342 IPR003591 -
Vvi10g367 767 SMART LRR_typ_2 221 245 IPR003591 -
Vvi10g367 767 SMART LRR_typ_2 366 390 IPR003591 -
Vvi10g367 767 SMART LRR_typ_2 125 149 IPR003591 -
Vvi10g367 767 SMART LRR_typ_2 294 317 IPR003591 -
Vvi10g367 767 Gene3D Ribonuclease Inhibitor 30 193 IPR032675 -
Vvi10g367 767 SUPERFAMILY L domain-like 32 269 - -
Vvi10g367 767 Pfam Leucine rich repeat N-terminal domain 34 70 IPR013210 -
Vvi10g367 767 SUPERFAMILY RNI-like 214 495 - -
Vvi10g367 767 Gene3D Ribonuclease Inhibitor 198 269 IPR032675 -
Vvi10g367 767 SMART LRR_sd22_2 294 320 - -
Vvi10g367 767 SMART LRR_sd22_2 197 223 - -
Vvi10g367 767 SMART LRR_sd22_2 125 151 - -
Vvi10g367 767 SMART LRR_sd22_2 456 482 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75987 PF00069 Pkinase 1.50E-40 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g367 K13420 K19613 vvi:100253808 651.744