Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g369 ATGATTATTGCTTATGGGTTTGTGAGACCATTGGCTGATAGATTGAAATTTCTATATATATATATATGCTTCTTCTGGTTCAAGATCCTTATTAGTATCAAGTGTTCATTGATGGAGCCCAGAAGTGTTGGTTTAACAGTAGTGGTAGTTTGTTCTGTTCTGGTTGTGGTGGTTATAAGCATGGATCCAAGTTTTGAAGTCGACCATCAGGCTTTGAAGGCCTTCAAGAGTTCAGTTGCTGACGATCCCTCTGGAGTGCTTGCAGATTGGAGTGAAGCCAACCATCATTGCAATTGGTCTGGAATCACATGTGACCCTTCATCCAGTCGTGTCATGTCAATTATACTGATGGAGAAGCAGCTTGCCGGCGTGATCTCCCCATTCCTTGGAAACCTTTCCAAACTCCAGGTTCTGGATGAAAGAAACCAAAACTATTTGGGGGCTAACTTTTTGGAAGGAAGCATTCCTGAAAGAATTTGTAACTGCACTGGCTTGCTGAATCTGGGCATTGATAACAACAATCTCAGTGGTGCCATCCCTTCCGACATTGGAAGATTAGATAATCTTCAAGTCTTCACAGGGTACAGAAATAATTTGGTTGGTTCTATACCAGTTTCCATTGGCACGTTGGGAGCTTTGCAGGTTCTAGACCTGAGTACAAACCATTTGTCTGGTGTATTACCTCCAGAAATAGGGAACTTGTCAAACCTTGAAACCCTTCAGTTGCTTGAAAATCAACTTCACGGGAAAATCCCACCTGAACTAGGGCTCTGTAGGAAGCTCACCACTCTGAATTTGTATGGCAATCAGTTAAGTTCTACAATTCCATCCTCTTTATTCCAATTGAAATCATTGATCCACTTGGGAATATCAGAGAATGAATTGAGTGGAACAATCCCTTTTGAAGTTGGGTCTCTGAGATCATTGCAAGCACTGACGCTGCAGTTAAATAAGTTCACTGGGCAAATCCCATCATCCATTACAAACTTGACAAACTTAACATATTTGTCTATGGACTTCAACTTCTTCACAGGTGATATTCCATCCAACATCGGATCGCTTTATCGTTTGAAGAACCTAACCCTGAACAATAACCTTCTCCAGGGGTCCATTCCATCCAGTATCTCTAACTGTACACGTCTACTTAGTGATCTTGGGTTGGGTAACAACCGGTTTGCAGGACCCATTCCACATGCTATCTCTAAGCTTGAGTCGCTTTTGTACTTGACCCTCCATGGAAACCTGTTCAATGGATCCATTCCAACGAGCATGGGACACCTTTCTCGGCTGGCAACCTTGGATCTCTCTCACAATCATCTGGTCGGGTCAATTCCGGGGCCTCTTGGGAAATTGGAGATGGTGCAGATCGTGGATATGTCAAACAATAATCTATCAGGGAGCATTCCAGCAACTCTTCAACGCTGCAAAAACTTGTTCAATATTGATCTGTCAGTGAACCAACTTTCCGGTACAATTCCAGAGAAGGCGTTTGCGGGAATGGATGTACTTACAAGCTTGAATCTTTCAAGAAATAATTTAGGTGGTAGACTACCTGGAAGCTTAGCGATTATGAAGAATCTAAGCTCCCTGGACCTTTCTCAGAACAAGTTCAAGGGCATGATCCCCGAGAGTTATGCAAATATTTCCACATTGAGGCATCTGAATCTTTCTTTCAATCAACTGGAAGGTCATACCCTGAGCCAACTCAGGCACAGAAACTTGGTAAAGGTACTTGGGTATGCCTGGGAAAGTGGAAAAATAAAGGCTCTTGTTCTGGAATACATGGAGAAGGGGAACTTGGACAGCATTATACATGAACCAGGGCCTTCAAATATTCTCTTGGATGGAGATTGGGAGGCCCATGTGAGTGATTTTGGAACAGCTCGAATTCTGGGTGTTCATCTCCAGGATGGAAGCAGTGTTTGCTCATCATCAGCATTTGAAGGCACAATTGGATACTTGGCACCAGAGTTGGCATACATGAGGGAGCTGACGACCAACGTGGATGTGTTCAGCTTTGGCATCATAGTGATGGAGTTCCTGACAAAAAGAAGGCCAACAGGACTGGCAGCTGATGATGGCATGCCATTGACCTTGCGTGAGATGGTGGATATGGGCCTTGCGAATTTTTTCTTTATCCTCGTTTTTTTTAGGCTTTTTTCCTTTTTTTTTTTTTTTTTTTTTTTTCTTCTTCTTCTATGCATGCAAATTTCAGCTTTTTTGATTTCCGGGTATAATATGATAACTTATATAGAATAG 2259 42.5 MIIAYGFVRPLADRLKFLYIYICFFWFKILISIKCSLMEPRSVGLTVVVVCSVLVVVVISMDPSFEVDHQALKAFKSSVADDPSGVLADWSEANHHCNWSGITCDPSSSRVMSIILMEKQLAGVISPFLGNLSKLQVLDERNQNYLGANFLEGSIPERICNCTGLLNLGIDNNNLSGAIPSDIGRLDNLQVFTGYRNNLVGSIPVSIGTLGALQVLDLSTNHLSGVLPPEIGNLSNLETLQLLENQLHGKIPPELGLCRKLTTLNLYGNQLSSTIPSSLFQLKSLIHLGISENELSGTIPFEVGSLRSLQALTLQLNKFTGQIPSSITNLTNLTYLSMDFNFFTGDIPSNIGSLYRLKNLTLNNNLLQGSIPSSISNCTRLLSDLGLGNNRFAGPIPHAISKLESLLYLTLHGNLFNGSIPTSMGHLSRLATLDLSHNHLVGSIPGPLGKLEMVQIVDMSNNNLSGSIPATLQRCKNLFNIDLSVNQLSGTIPEKAFAGMDVLTSLNLSRNNLGGRLPGSLAIMKNLSSLDLSQNKFKGMIPESYANISTLRHLNLSFNQLEGHTLSQLRHRNLVKVLGYAWESGKIKALVLEYMEKGNLDSIIHEPGPSNILLDGDWEAHVSDFGTARILGVHLQDGSSVCSSSAFEGTIGYLAPELAYMRELTTNVDVFSFGIIVMEFLTKRRPTGLAADDGMPLTLREMVDMGLANFFFILVFFRLFSFFFFFFFFLLLLCMQISAFLISGYNMITYIE* 753
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5035821 5045921 - Vvi10g369 Vvi10g369 770968
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g369 752 Pfam Leucine rich repeat 259 318 IPR001611 GO:0005515
Vvi10g369 752 Pfam Leucine rich repeat 455 513 IPR001611 GO:0005515
Vvi10g369 752 Pfam Leucine rich repeat 382 440 IPR001611 GO:0005515
Vvi10g369 752 ProSiteProfiles Leucine-rich repeat profile. 260 282 IPR001611 GO:0005515
Vvi10g369 752 PRINTS Leucine-rich repeat signature 213 226 - -
Vvi10g369 752 PRINTS Leucine-rich repeat signature 427 440 - -
Vvi10g369 752 SUPERFAMILY L domain-like 66 314 - -
Vvi10g369 752 SUPERFAMILY Protein kinase-like (PK-like) 560 688 IPR011009 -
Vvi10g369 752 SMART LRR_typ_2 306 330 IPR003591 -
Vvi10g369 752 SMART LRR_typ_2 524 547 IPR003591 -
Vvi10g369 752 SMART LRR_typ_2 259 282 IPR003591 -
Vvi10g369 752 SMART LRR_typ_2 427 451 IPR003591 -
Vvi10g369 752 SMART LRR_typ_2 210 233 IPR003591 -
Vvi10g369 752 SMART LRR_typ_2 234 258 IPR003591 -
Vvi10g369 752 SMART LRR_typ_2 354 378 IPR003591 -
Vvi10g369 752 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 235 497 - -
Vvi10g369 752 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 609 697 - -
Vvi10g369 752 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 146 381 - -
Vvi10g369 752 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 61 277 - -
Vvi10g369 752 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 564 605 - -
Vvi10g369 752 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 309 564 - -
Vvi10g369 752 Pfam Protein kinase domain 609 688 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g369 752 PANTHER UNNAMED PRODUCT 235 497 - -
Vvi10g369 752 PANTHER UNNAMED PRODUCT 564 605 - -
Vvi10g369 752 PANTHER UNNAMED PRODUCT 146 381 - -
Vvi10g369 752 PANTHER UNNAMED PRODUCT 61 277 - -
Vvi10g369 752 PANTHER UNNAMED PRODUCT 609 697 - -
Vvi10g369 752 PANTHER UNNAMED PRODUCT 309 564 - -
Vvi10g369 752 Gene3D Ribonuclease Inhibitor 67 193 IPR032675 -
Vvi10g369 752 Gene3D Transferase(Phosphotransferase) domain 1 587 709 - -
Vvi10g369 752 Gene3D Ribonuclease Inhibitor 194 303 IPR032675 -
Vvi10g369 752 ProSiteProfiles Protein kinase domain profile. 454 752 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g369 752 Gene3D Ribonuclease Inhibitor 305 576 IPR032675 -
Vvi10g369 752 Pfam Leucine rich repeat N-terminal domain 68 105 IPR013210 -
Vvi10g369 752 SUPERFAMILY RNI-like 275 571 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75988 PF00069 Pkinase 1.50E-12 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g369 K13420 - qsu:112030622 464.536