Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g37 ATGGAAGAGATGAACTGCATCTTGTGTTGCAGATTGACAGGTGACAACACGGTGGAGAAGAAGAAGAGCATTGAGGAAAATAAAGACGATAAAACAGTAGCCTCATTTGTTAAAGACATCGCATGGAAATCTGCAGGTACTGACAAGAAGGGGACTCTAACCAAAGAGATACTAAAAGCCGGAAACCCAAAAATTTCTGCCCAAGTTTTCACATTCCGTGAACTGGCAACTGCAACAAGCAACTTCAGGGCTGAGTGTTTGTTGGGAGAAGGTGGATTTGGGAGGGTCTACAAAGGGCATATCAACAATCAAGATGTGGCTGTTAAGCAGCTTGATAGGAATGGCGTACAGGGAAACCGAGAATTCCTGGCAGAGGTTCTGATGTTAAGCCTTGTTCACCACCCCAACCTTGTGAATCTGATGGGCTATTGTGCTGAAGGGGATCAGAGAATTTTAGTATATGAATACATGCCCAATGGATCTCTGGAAAATCTCCTCTTTGATTTGCCTCCAAATCAGGAGCCTCTGGATTGGATTACCAGGATGAAGATAGCTGAAGGGGCAGCTAAAGGGCTAGAATTCTTGCATGAAGGTGCCAACCCACCAGTGATTTATCGCGACTTCAAAGCATCTAATATATTGTTGGATGAGGAATTCAATCCCAAACTATCTGATTTTGGACTTGCTAAGCTGGGCCCAACAGGAGGCCAGGACCATGTGTCTACCAGAGTGATGGGAACCTATGGCTACTGTGCACCAGAGTATGCATTGACAGGCAAGCTGACCACCAAGTCTGATGTGTACAGCTTTGGGGTAATGTTTCTTGAGATGATCACTGGTAGGAGAGTTATTGACACTACTAGACCAACTGAGGAGCAGAACCTGATTTCTTGGGCAGCCCCACTGTTCAGAGACAAGAAGAAATTTACACTGATGGCTGACCCATTGCTTGAAGGGAAGTACCCGGTAAAGAGTCTCTATCAAGCTCTTGCAGTTGCAGCCATGTGTCTCCAAGAAGAAGCTAGCACCAGGCCTTTGATCAGTGATGTTGTAGCTGCTCTTGAGTTTCTAGCTAGACCAAAAGCTAAGCTGACAAGAAGGAATCTAAAATTGAAGAAGGTGTGGACCCAGAAGAAACCAGGACTCCCTCTGAAACAGTAG 1161 45.39 MEEMNCILCCRLTGDNTVEKKKSIEENKDDKTVASFVKDIAWKSAGTDKKGTLTKEILKAGNPKISAQVFTFRELATATSNFRAECLLGEGGFGRVYKGHINNQDVAVKQLDRNGVQGNREFLAEVLMLSLVHHPNLVNLMGYCAEGDQRILVYEYMPNGSLENLLFDLPPNQEPLDWITRMKIAEGAAKGLEFLHEGANPPVIYRDFKASNILLDEEFNPKLSDFGLAKLGPTGGQDHVSTRVMGTYGYCAPEYALTGKLTTKSDVYSFGVMFLEMITGRRVIDTTRPTEEQNLISWAAPLFRDKKKFTLMADPLLEGKYPVKSLYQALAVAAMCLQEEASTRPLISDVVAALEFLARPKAKLTRRNLKLKKVWTQKKPGLPLKQ* 387
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 392976 396081 - Vvi10g37 Vvi10g37 770636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g37 386 Gene3D Transferase(Phosphotransferase) domain 1 157 378 - -
Vvi10g37 386 Gene3D Phosphorylase Kinase; domain 1 55 156 - -
Vvi10g37 386 SUPERFAMILY Protein kinase-like (PK-like) 64 357 IPR011009 -
Vvi10g37 386 Pfam Protein kinase domain 86 351 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g37 386 PANTHER OS07G0668900 PROTEIN 17 365 - -
Vvi10g37 386 ProSitePatterns Protein kinases ATP-binding region signature. 88 109 IPR017441 GO:0005524
Vvi10g37 386 PANTHER SERINE-THREONINE PROTEIN KINASE, PUTATIVE-RELATED 17 365 - -
Vvi10g37 386 ProSitePatterns Serine/Threonine protein kinases active-site signature. 203 215 IPR008271 GO:0004672|GO:0006468
Vvi10g37 386 ProSiteProfiles Protein kinase domain profile. 82 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi10g37 Vvi12g473 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75989 PF00069 Pkinase 1.80E-44 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g37 - - vvi:100264109 729.554