Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g399 ATGAGAGTTAGACCTGCAAGGCTGCAACCCCTAATATTTTTGATGTCGTTTTCTTGTGCAAAAGCCTTCTTCCAACGGTTTTGTGTTGAAGAGTTCCAAATGGAGAGAACTAGCCTAGGTTCCGTCTTCTCTAGTCATCTCCTCCCATCTCTTGGGGCCAGAATCAACCAGGCAACAAAGCTTCAAAAACACATAATTTCTCCTTTCAGTCCCCGTTACAGGGCTTGGGAAATGTTGCTGATTATTCTGGTCATCTACTCTGCCTGGATCTGCCCATTTGAGTTTGGATTTCTGCCCTACAAGCAAGACGCGCTTTTCATCTTCGATAACATTGTCAATGGCTTCTTCGCCATCGATATCGTTCTCACTTTCTTTGTAGCATATCTCGACACAGAAACTTATCTTCTTGTTGATGATGCCAAGAAAATTGCAATCAGGTACATATCTACCTGGTTTATCTTCGATGTCTGTTCGACAGCGCCATTTGAAGCTTTCAGCCTCCTGTTCACAAAGCATAACAGTGGACTCGGCTATAAAGCACTCAACATGCTCAGGCTCTGGCGACTGAGACGAGTCAGCTCCCTGTTTGCAAGACTAGAGAAGGACATCCGGTTTAACTACTTCTGGATTCGATGCATAAAGCTCACTTCTGTAACTCTGTTTGCAGTACACTGTGCTGGATGCTTTAACTATCTGATTGCAGATAGATACCCGGATCCAGAACGAACCTGGATTGGTGCAGTCTATCCAAATTTCAAAGAAGAGAACCTCTGGGACAGATATGTAACTTCAATTTACTGGTCTATTACTACACTAACTACTACTGGTTATGGAGACTTGCATGCTGAGAACCCAAGAGAGATGCTGTTTGATATTTTTTACATGCTATTCAACTTGGGATTAACATCTTACCTCATTGGGAACATGACCAATCTTGTTGTTCACTGGACCAGCCGGACCAGAGATTTTAGGGATACAGTCAGGTCTGCTTCAGAGTTTGCAACAAGGAATCAATTGCCCCCACGCATTCAGGATCAGATGCTGTCGCACTTATGTCTCAAGTTCAAAACAGAAGGATTGAAACAACAAGACACTTTGAATGGCCTGCCAAGAGCCATTCGCTCCAGCATTGCACACTATCTCTTCTTCCCTATCGCTCAAAATGTCTATCTTTTCCAGGGTGTTTCTCAGGACTTCCTTTTCCAACTGGTTTCTGAAGTGGAGGCTGAGTATTTCCCACCTAGAGAAGATGTGATTCTACAGAAGGAGGCTCCAACAGATATATATATTCTTGTCTCGGGAGCGGTGGATTTGATAGCATATATTGACGGACATGATCAGATTCTCGGAAAGGCTGTTGCAGGGGATGTGTTTGGAGAGATTGGGGTTTTATGTTATAGGCCACAATCGTTAACAGTCCGGACCTCTGAGCTTTCTCAGATACTAAGATTAAGCAGAACTTCACTGATGAACGCAATCCAAGCAAATATGGAAGATGGACAAATTATTATGAACAATCTTTTCAAGAAACTGAAAGGGCTAGAAAGCTCAGGCTTTACAGACCCACATATGGACCCAGAAATTCTGCTAGAAAGAGGAGCAAATGTGAACAAAAAGGATGCTAGAGGAACGGGGGGGCCCAATTTTCACAACTCTCAATTTAAAAAGGTATCCACAAATTCCAATTCAGGCAGTCCTAGCCCTCCCGGCAACAAAGATGTTATGACATTGACCAAGAGGAGAGTCACTATCCACAGACAGTTTCAAAATGCAAGTACATCACAGGGGCAGTTTGGGAAGTTGATTATTCTACCTGATTCAATAGAAGAGCTACTGCAAATTGCTGGTCAAAAGTTTGGAGGCTACAATCCCACCAAAGTCGTTAGTGCAGGGAATGCAGAAATAGATGACATAAGCGTTATCCGAGATGGGGATCATCTGTTTCTACTTCAAAATGAGAATGAAACTACAATTACAATGTTACCTAATGGTTACTGA 1998 42.89 MRVRPARLQPLIFLMSFSCAKAFFQRFCVEEFQMERTSLGSVFSSHLLPSLGARINQATKLQKHIISPFSPRYRAWEMLLIILVIYSAWICPFEFGFLPYKQDALFIFDNIVNGFFAIDIVLTFFVAYLDTETYLLVDDAKKIAIRYISTWFIFDVCSTAPFEAFSLLFTKHNSGLGYKALNMLRLWRLRRVSSLFARLEKDIRFNYFWIRCIKLTSVTLFAVHCAGCFNYLIADRYPDPERTWIGAVYPNFKEENLWDRYVTSIYWSITTLTTTGYGDLHAENPREMLFDIFYMLFNLGLTSYLIGNMTNLVVHWTSRTRDFRDTVRSASEFATRNQLPPRIQDQMLSHLCLKFKTEGLKQQDTLNGLPRAIRSSIAHYLFFPIAQNVYLFQGVSQDFLFQLVSEVEAEYFPPREDVILQKEAPTDIYILVSGAVDLIAYIDGHDQILGKAVAGDVFGEIGVLCYRPQSLTVRTSELSQILRLSRTSLMNAIQANMEDGQIIMNNLFKKLKGLESSGFTDPHMDPEILLERGANVNKKDARGTGGPNFHNSQFKKVSTNSNSGSPSPPGNKDVMTLTKRRVTIHRQFQNASTSQGQFGKLIILPDSIEELLQIAGQKFGGYNPTKVVSAGNAEIDDISVIRDGDHLFLLQNENETTITMLPNGY* 666
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5451219 5456608 + Vvi10g399 Vvi10g399 770998
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g399 665 MobiDBLite consensus disorder prediction 539 575 - -
Vvi10g399 665 SMART cnmp_10 391 508 IPR000595 -
Vvi10g399 665 MobiDBLite consensus disorder prediction 546 572 - -
Vvi10g399 665 Pfam Ion transport protein 74 320 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Vvi10g399 665 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 19 - -
Vvi10g399 665 PRINTS EAG/ELK/ERG potassium channel family signature 86 93 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vvi10g399 665 PRINTS EAG/ELK/ERG potassium channel family signature 109 119 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vvi10g399 665 PRINTS EAG/ELK/ERG potassium channel family signature 120 129 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vvi10g399 665 PRINTS EAG/ELK/ERG potassium channel family signature 261 278 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vvi10g399 665 PRINTS EAG/ELK/ERG potassium channel family signature 287 298 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vvi10g399 665 PRINTS EAG/ELK/ERG potassium channel family signature 305 314 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vvi10g399 665 SUPERFAMILY cAMP-binding domain-like 318 511 IPR018490 -
Vvi10g399 665 Pfam KHA, dimerisation domain of potassium ion channel 580 649 IPR021789 -
Vvi10g399 665 Gene3D Jelly Rolls 355 513 IPR014710 -
Vvi10g399 665 PANTHER POTASSIUM CHANNEL KAT1 15 527 - -
Vvi10g399 665 PANTHER POTASSIUM CHANNEL KAT1 528 651 - -
Vvi10g399 665 Pfam Cyclic nucleotide-binding domain 411 495 IPR000595 -
Vvi10g399 665 CDD CAP_ED 391 504 IPR000595 -
Vvi10g399 665 ProSiteProfiles cAMP/cGMP binding motif profile. 391 510 IPR000595 -
Vvi10g399 665 SUPERFAMILY Voltage-gated potassium channels 68 313 - -
Vvi10g399 665 PANTHER POTASSIUM CHANNEL AKT1 528 651 IPR045319 GO:0005249|GO:0006813
Vvi10g399 665 PANTHER POTASSIUM CHANNEL AKT1 15 527 IPR045319 GO:0005249|GO:0006813
Vvi10g399 665 Gene3D - 74 314 - -
Vvi10g399 665 ProSiteProfiles KHA domain profile. 581 665 IPR021789 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g399 K21867 - vvi:100233105 1026.54