Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g42 ATGAAGTATGGGTTATTTGCGACGTATCCTCTCAGGGACGGTGAGAATTTGTCGACCGTGGCGGCGGCGGCTGGCATCACCGACGATTTGGTGCGGCGGTATAATCCGGCGGCCGATTTTAGTGCTGGGACTGGGCTAGTGTTTGTGCCGGCCAAAGAATCGAAGTGTAGCAGAACTTGCGATCTTGCGTTGGCTTCGTATAATCTATGGAAGGGTGTAGATCTCAATTTCATAGCTACTACCTTTTCAAGAGATGTTTCTGAAATTCAAAGTTTCAATCCTCAGATAACCAACATAGATCTCATTATAGCTGGTGAAAGAGTGAACGTGCCCTTCTCATGTGGTTGCATTGACAGGGAGTTTCTTGGTACAACATTTGTCTACTCGGCTAAGCAAAATGATACCTATAGTATCATTGCTGAGAAATACTTCGCAAACCTCACTACTGTTGAATGGTTGCAGAGATTTAATACCTATGCACCTACCAATATACCCATCGATGCTCCCATAAATGTCACTGTGAATTGTTCTTGTGGAAATAGTAGTGTCTCCAAGGATTATGGGTTGTTCGTGACCTACCCTCTTGAGCCTGGTGAGAACTTGTCCACCATTGCCAATCAGTCTGGACTTCCTCCCCAGTTGTTGCAGGATTATAACCCTGATTCCGATTTCAGCCGTGGGAGTGGGTTGGTTTTTATTCCTGGAAAAGATCAAAATGAAACCTATCCACCACTGAAGTTAAGCAACAGCGCAGGGATCTCCAGTGGAGTCATTGCTGGCATATCTGTGGCTGGAATTGTGGGCTCTTTGCTTTTTGCCTTTTTTCTGTTTGCTCGAATTTGTAAAAGGAAGAAGGTGAAAAAAGTACTGTTTTTCCCGGCAGCATCTGAACAACAATATATGCAACATAGACAAGCTCATGGAAGTGCCTCAGAAGAGACTTCAGATTCAGCTGCTCTTGTTGGTGCTGCTTCTCTGGGGCTCGTAGGTATAACTGTGGACAAATCTGTGGAGTTTTCATATGAAGAGCTGGCCACAGCTACAGACAACTTCAGCTTGGCTAATAAGATCGGCCAAGGTGGCTTTGGATCTGTCTACTATGCAGAGCTGAGAGGCGAGAAAGCTGCAATCAAGAAGATGGACATGCAAGCATCAAAGGAGTTCCTTGCTGAACTGAAGGTTCTAACACATGTTCATCACCTGAACCTGGTGCGCTTAATAGGATATTGTGTCGAGGGTTCCTTATTCCTAGTCTACGAATTCATTGATAATGGAAATTTAAGTCATCATTTGCGTGGTTCTGGGAAGGATCCATTGCCATGGTCCAGTAGGGTGCAAATTGCCCTTGATTCAGCAAGAGGGCTTGAGTATATTCATGAGCATACAGTTCCTGTGTATATTCATCGTGATATTAAACCAGCAAACATTTTGATAGACAAAAAATTTCGTGCAAAGGTTGCAGATTTTGGGTTAACAAAACTAACTGAAGTTGGAAGTGCTTCAATACCTACACGTCTTGTGGGTACATTTGGATACATGCCTCCAGAATATGCCCAATATGGTGATGTTTCCCCTAAGATAGATGTATTCGCTTTTGGAGTTGTCCTTTATGAACTCATATCTGCCAAGGAAGCCATTGTCAAGACAAATGAACCTATTATGCCCGAGTCAAAAGGACTTGTTGCTTTGTTTGAGGATGTTCTCAGCCAGCCTGATCCAAGAGAAGATTTTGTTAAGCTTATAGACCAGAGGCTTGGAGATGACTACCCTCTTGACTCAATTTGGAAGATGGCCCATCTTGCCAAAGCTTGCACACAGGAAAATCCTCAGTTGAGACCAAGCATGAGGTCAATTGTCGTTGCACTAATGACACTTTCATCATCAACCGAAGATTGGGATGTTGGGTCCTTCTATGAAAATGAGGCTCTGATGAATCTAATGTCAGGAAGGTAG 1953 43.78 MKYGLFATYPLRDGENLSTVAAAAGITDDLVRRYNPAADFSAGTGLVFVPAKESKCSRTCDLALASYNLWKGVDLNFIATTFSRDVSEIQSFNPQITNIDLIIAGERVNVPFSCGCIDREFLGTTFVYSAKQNDTYSIIAEKYFANLTTVEWLQRFNTYAPTNIPIDAPINVTVNCSCGNSSVSKDYGLFVTYPLEPGENLSTIANQSGLPPQLLQDYNPDSDFSRGSGLVFIPGKDQNETYPPLKLSNSAGISSGVIAGISVAGIVGSLLFAFFLFARICKRKKVKKVLFFPAASEQQYMQHRQAHGSASEETSDSAALVGAASLGLVGITVDKSVEFSYEELATATDNFSLANKIGQGGFGSVYYAELRGEKAAIKKMDMQASKEFLAELKVLTHVHHLNLVRLIGYCVEGSLFLVYEFIDNGNLSHHLRGSGKDPLPWSSRVQIALDSARGLEYIHEHTVPVYIHRDIKPANILIDKKFRAKVADFGLTKLTEVGSASIPTRLVGTFGYMPPEYAQYGDVSPKIDVFAFGVVLYELISAKEAIVKTNEPIMPESKGLVALFEDVLSQPDPREDFVKLIDQRLGDDYPLDSIWKMAHLAKACTQENPQLRPSMRSIVVALMTLSSSTEDWDVGSFYENEALMNLMSGR* 651
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 414662 422180 + Vvi10g42 Vvi10g42 770641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g42 650 ProSiteProfiles Protein kinase domain profile. 351 625 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g42 650 ProSitePatterns Serine/Threonine protein kinases active-site signature. 466 478 IPR008271 GO:0004672|GO:0006468
Vvi10g42 650 CDD STKc_IRAK 357 619 - -
Vvi10g42 650 SUPERFAMILY Protein kinase-like (PK-like) 332 622 IPR011009 -
Vvi10g42 650 Gene3D Phosphorylase Kinase; domain 1 336 421 - -
Vvi10g42 650 ProSitePatterns Protein kinases ATP-binding region signature. 357 379 IPR017441 GO:0005524
Vvi10g42 650 Pfam Protein tyrosine and serine/threonine kinase 353 621 IPR001245 GO:0004672|GO:0006468
Vvi10g42 650 SMART serkin_6 351 624 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g42 650 Gene3D Transferase(Phosphotransferase) domain 1 422 640 - -
Vvi10g42 650 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 54 650 IPR044812 GO:0019199|GO:0045087
Vvi10g42 650 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 2 54 IPR044812 GO:0019199|GO:0045087
Vvi10g42 650 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-LIKE 54 650 - -
Vvi10g42 650 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-LIKE 2 54 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi10g42 Vvi12g419 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75990 PF07714 PK_Tyr_Ser-Thr 2.10E-45 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g42 - K13429 vri:117923989 1012.68