Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g44 ATGGGAAAGGCACCACTTCTCCCAGCAGCATTTGAAGACCAACATATGCAACCTGGACAGGGTTATGGAAGTACCTTGGAAAAAACTTCAGATTCAGTTGCTCTGGTTGCTGCTGTTTCTCTGGAGCTTGTTGGTATAACTGCAGACAAATCAGTGGAGTTCACATATGAAGAGCTGGCCAAGGCTACAAATAACTTTAGTGCAGCTAGTAAGATTGGCCAAGGCGGTTTTGCATTAGTTTACTATGCGGAGCTGCAAGGCCAGAAGGCTGCAATCAAGAAGATGGACATGCAGGCATCAAAGGAGTTCCTTGCTGAACTAAAAGTTCTAACACATGTCCATCACTTCAACCTGGTTCGCCTGATAGGATATTGTGTTACGGGTTCCTTATTCATCGTCTATGAGTACATTGAGAATGGCAACTTAAGCCAACATTTGCGTGGTTCAGGGAATGATCCATTGCCATGGTCTACTAGGGTCCAAATCGCCCTTGATGCAGCCAGAGGGCTTGAATATATTCATGAGCACACTGTCCCTGTGTATGTACATCGTGATATTAAATCAGCGAACATTTTGATAGACAAAAACTTGCGTGCAAAGGTTGCAGATTTTGGATTAACCAAACTGACTGTAGCTGGAAGTTCTTCATTGCCCACTCGTCTTGTTGGTACATTTGGATACATGCCTCCAGAATATGCTCAATTTGGTGCAGTTACCCCCAAGATAGATGTATATGCTTTTGGGGTTGTCCTATATGAACTTATATCTGCCAAAGAAGCCATTATCAAGACAAATGGATCTACTACCACTGAAGCAAGAGGACTTGTTGCCTTGTTTGAGAATGTTCTCAGTTGGCCGGATCTGAGAGAAGATTTCTGTGAACTTATTGACCACAGACTTGGCAATGACTACCCACTTGACTTAATTTGGAAGATGGCCCAGCTTGCCAAAGCTTGCACACAAGAAGATCCTCAACTGAGACCAAGCATGCAGTCAGTAGTTGTCGCACTAATGACGCTTTCATCCTCGACTGAAGATTGGGATGTCAGATCCGTGTATGAAAACAAAGCTCTAGTGAATCTGATGTCAGGAAGATAG 1098 43.72 MGKAPLLPAAFEDQHMQPGQGYGSTLEKTSDSVALVAAVSLELVGITADKSVEFTYEELAKATNNFSAASKIGQGGFALVYYAELQGQKAAIKKMDMQASKEFLAELKVLTHVHHFNLVRLIGYCVTGSLFIVYEYIENGNLSQHLRGSGNDPLPWSTRVQIALDAARGLEYIHEHTVPVYVHRDIKSANILIDKNLRAKVADFGLTKLTVAGSSSLPTRLVGTFGYMPPEYAQFGAVTPKIDVYAFGVVLYELISAKEAIIKTNGSTTTEARGLVALFENVLSWPDLREDFCELIDHRLGNDYPLDLIWKMAQLAKACTQEDPQLRPSMQSVVVALMTLSSSTEDWDVRSVYENKALVNLMSGR* 366
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 424699 428270 + Vvi10g44 Vvi10g44 770643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g44 365 SMART serkin_6 66 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g44 365 Pfam Protein tyrosine and serine/threonine kinase 69 336 IPR001245 GO:0004672|GO:0006468
Vvi10g44 365 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-LIKE 3 365 - -
Vvi10g44 365 ProSitePatterns Protein kinases ATP-binding region signature. 72 94 IPR017441 GO:0005524
Vvi10g44 365 PIRSF ILK 40 355 - -
Vvi10g44 365 Gene3D Transferase(Phosphotransferase) domain 1 137 359 - -
Vvi10g44 365 SUPERFAMILY Protein kinase-like (PK-like) 48 337 IPR011009 -
Vvi10g44 365 ProSiteProfiles Protein kinase domain profile. 66 340 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g44 365 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 3 365 IPR044812 GO:0019199|GO:0045087
Vvi10g44 365 Gene3D Phosphorylase Kinase; domain 1 51 136 - -
Vvi10g44 365 ProSitePatterns Serine/Threonine protein kinases active-site signature. 181 193 IPR008271 GO:0004672|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi10g44 Vvi12g419 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75992 PF07714 PK_Tyr_Ser-Thr 2.40E-46 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g44 - K13429 vvi:100262323 713.375