Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g460 ATGAAAGTGCTATGGAGGTGGATGAGATTCAGACGCAGGCATGACGAGGAAGATGGAGAAATTAAAAGGGGAGGTGGTGGAGGAAGCGATGGTGGTCGCCTTCGCGCTTGGCACCACTCTCGGATTTTTAGGGTATCTCGAGCTTCCGGCGGCAAGGATAGGCATAGTAAGGTTTTGACGTCCAAAGGGCTAAGGGACCGGCGTGTTCGGCTTTCAGTCACCACCGCGATACAATTCTATGATCTTCAAGATCGGTTGGGTTATGATCAGCCCAGTAAAGCTGTGGAGTGGTTGATTAAAGCAGCTTCAGATGCTATTGCCGAGCTCCCTTCGCTGAATAGTTCATTTCCTGATACACCGAAGCAACTGAGCGATGAAAAAAGACCGAGCCCTGGCACTGAACAAGGGTTTGATTCGCATATTTCTTTGTCGAAATCTGCTTGTAGTAGCACTTCAGAGACGAGCAAGGGCTCAGGCTCGTCTTTCACAGAACTACTCACTGGGGGTATTGGCTGTGCTAGCAATAACGCGACTTCAGTTCAGCACAACCCCAGATTTGCTGGACAAATCCACTTGGGAAATTCACTGCCGCAATCGCCGTTCAATGTGGCTGGCGATCATCATCCGGAGCTGCAGCATTTTTCTTTTGTTCCCGACCATCTTATCCCGGTGGCGACTTCGCAACCCGGTGGTAGTGACAACAACCTCAACTTTACAATCTCTTCCGGCCTTGCTGGTTTCAATAGGGGGACCCTTCAGTCCAATTCTCCGTCTCTGTTGCCTCACCTTCAGAGGTTTTCTCCTATAGACGGATCAAATCTACCTTTCTTCATGGGCGCTGCTCCTGTGGAGAATCATCACCACCATCATCAATTTCCACCTGGATTTGATGGCTGCTTGCAACTCTACTATGGCGACGGAAGCAGGCATTCAGACCAGAAGGGAAAAGGAAAGAACTAA 960 49.69 MKVLWRWMRFRRRHDEEDGEIKRGGGGGSDGGRLRAWHHSRIFRVSRASGGKDRHSKVLTSKGLRDRRVRLSVTTAIQFYDLQDRLGYDQPSKAVEWLIKAASDAIAELPSLNSSFPDTPKQLSDEKRPSPGTEQGFDSHISLSKSACSSTSETSKGSGSSFTELLTGGIGCASNNATSVQHNPRFAGQIHLGNSLPQSPFNVAGDHHPELQHFSFVPDHLIPVATSQPGGSDNNLNFTISSGLAGFNRGTLQSNSPSLLPHLQRFSPIDGSNLPFFMGAAPVENHHHHHQFPPGFDGCLQLYYGDGSRHSDQKGKGKN* 320
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 6666047 6669048 - Vvi10g460 Vvi10g460 771059
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g460 319 MobiDBLite consensus disorder prediction 135 160 - -
Vvi10g460 319 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 176 319 IPR005333 GO:0003700
Vvi10g460 319 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 14 162 IPR005333 GO:0003700
Vvi10g460 319 MobiDBLite consensus disorder prediction 111 160 - -
Vvi10g460 319 PANTHER TRANSCRIPTION FACTOR TCP24 14 162 - -
Vvi10g460 319 PANTHER TRANSCRIPTION FACTOR TCP24 176 319 - -
Vvi10g460 319 ProSiteProfiles TCP domain profile. 51 109 IPR017887 -
Vvi10g460 319 Pfam TCP family transcription factor 50 155 IPR017887 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi10g460 Vvi12g203 ECH
Vvi10g460 Vvi19g139 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13671 PF03634 TCP 5.30E-35 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g460 - - vvi:100249845 530.406