Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g470 ATGGCGTCACGGTCAAGTACTGGCAGGACACGTGTGGGGAAGTATGAATTGGGTCGAACCCTAGGGGAAGGGACGTTTGCAAAGGTCAAGTTTGCGAGGAATGTGGAGACTGGGGAGAATGTTGCTATTAAGATTCTCGACAAAGAAAAGGTTCTTAAGCATAAGATGATCGGTCAGATTAAAAGGGAAATTTCAACCATGAAACTGATCAGACATCCAAATGTCATTCGAATGCATGAGGTGATGGCTAGCAAGACAAAGATATACATTGTTTTGGAATTTGTGACTGGTGGTGAACTTTTTGACAAAATTGCTAGTAAAGGAAGGTTGAAAGAAGATGAAGCAAGAAAGTATTTCCAACAGCTAATTAACGCTGTGGATTACTGCCATAGTAGATGTGTTTTCCATAGAGACCTAAAGCCGGAGAATCTATTGCTTGATGCTAATGGAGTTCTTAAAGTTTCAGATTTTGGATTGAGTGCACTACCTCAACAAGTTCGAGAAGATGGGTTACTTCACACAACATGTGGAACTCCAAACTATGTTGCTCCAGAGGTGATCAATAACAAAGGCTATGATGGAGCTAAGGCAGACCTATGGTCATGTGGGGTAATCTTATTTGTTCTTATGGCTGGCTATTTGCCTTTTGAAGAATCGAACCTCATGGCTTTGTATAAAAAGATATTCAAGGCCGACTTTACGTTTCCTCCCTGGTTATCCTCAAGTGCAAAGAAGCTAATTAAAAGAATCTTGGACCCTAACCCGGAGACGAGGATTACAATTGCTGAAGTCATTGAGAATGAGTGGTTTAAGAAGGGATATAAGCCACCTAGTTTCGAACAAGCAGATGTTAGTCTTGATGATGTGGACGCCATCTTTGATGAATCAGGGGACTCTCAAAACCTTGTTGTGGAGAGGCGTGAAGAGCGACCTACGACGCCTGTCACTTTGAATGCTTTTGAACTCATCTCTACATCTCAGGGTCTCAACCTCGGTACTCTCTTTGAAAAGCCAATGGGCCTTGTTAAACGGGAGACAAGATTCACATCGAAGCGTCCTGCCAATGAGATTATCTCAAAAATTGAGGAAACTGCTATGCCTTTGGGGTTTGATGTAAAGAAAAATAACTTCAAGATGAAACTTCAAGGGGAGAAAACTGGACGCAAGGGTCATTTATCCATTGCAACAGAGATTTTTGAGGTGGCCCCTTCGCTATACATGGTTGAGCTTCGAAAATCTGGGGGAGATACTTTGGAATTTCACAAGTTCTACAAGAACCTCTCAACTGGGTTGAAAGATATTGTTTGGAAATCAGGAGATGAATCAAAGGAGGAAGTGAATAATGGGTCTGGTGTGGCATCAACTTGA 1368 41.96 MASRSSTGRTRVGKYELGRTLGEGTFAKVKFARNVETGENVAIKILDKEKVLKHKMIGQIKREISTMKLIRHPNVIRMHEVMASKTKIYIVLEFVTGGELFDKIASKGRLKEDEARKYFQQLINAVDYCHSRCVFHRDLKPENLLLDANGVLKVSDFGLSALPQQVREDGLLHTTCGTPNYVAPEVINNKGYDGAKADLWSCGVILFVLMAGYLPFEESNLMALYKKIFKADFTFPPWLSSSAKKLIKRILDPNPETRITIAEVIENEWFKKGYKPPSFEQADVSLDDVDAIFDESGDSQNLVVERREERPTTPVTLNAFELISTSQGLNLGTLFEKPMGLVKRETRFTSKRPANEIISKIEETAMPLGFDVKKNNFKMKLQGEKTGRKGHLSIATEIFEVAPSLYMVELRKSGGDTLEFHKFYKNLSTGLKDIVWKSGDESKEEVNNGSGVAST* 456
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 6827853 6838091 + Vvi10g470 Vvi10g470 771069
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g470 455 CDD CIPK_C 318 433 - -
Vvi10g470 455 CDD STKc_SnRK3 14 269 - -
Vvi10g470 455 ProSiteProfiles Protein kinase domain profile. 15 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g470 455 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 9 442 - -
Vvi10g470 455 ProSitePatterns Serine/Threonine protein kinases active-site signature. 134 146 IPR008271 GO:0004672|GO:0006468
Vvi10g470 455 Pfam Protein kinase domain 15 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g470 455 ProSiteProfiles NAF domain profile. 312 336 IPR018451 GO:0007165
Vvi10g470 455 ProSitePatterns Protein kinases ATP-binding region signature. 21 44 IPR017441 GO:0005524
Vvi10g470 455 Gene3D Phosphorylase Kinase; domain 1 4 94 - -
Vvi10g470 455 SMART serkin_6 15 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g470 455 Gene3D Transferase(Phosphotransferase) domain 1 95 277 - -
Vvi10g470 455 PANTHER SERINE/THREONINE KINASE 9 442 - -
Vvi10g470 455 Gene3D Kinase associated domain 1, KA1 312 437 - -
Vvi10g470 455 SUPERFAMILY Protein kinase-like (PK-like) 12 284 IPR011009 -
Vvi10g470 455 Pfam NAF domain 314 374 IPR004041 GO:0007165
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75993 PF00069 Pkinase 2.70E-75 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g470 - - vvi:100253180 895.19