Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi10g470 | ATGGCGTCACGGTCAAGTACTGGCAGGACACGTGTGGGGAAGTATGAATTGGGTCGAACCCTAGGGGAAGGGACGTTTGCAAAGGTCAAGTTTGCGAGGAATGTGGAGACTGGGGAGAATGTTGCTATTAAGATTCTCGACAAAGAAAAGGTTCTTAAGCATAAGATGATCGGTCAGATTAAAAGGGAAATTTCAACCATGAAACTGATCAGACATCCAAATGTCATTCGAATGCATGAGGTGATGGCTAGCAAGACAAAGATATACATTGTTTTGGAATTTGTGACTGGTGGTGAACTTTTTGACAAAATTGCTAGTAAAGGAAGGTTGAAAGAAGATGAAGCAAGAAAGTATTTCCAACAGCTAATTAACGCTGTGGATTACTGCCATAGTAGATGTGTTTTCCATAGAGACCTAAAGCCGGAGAATCTATTGCTTGATGCTAATGGAGTTCTTAAAGTTTCAGATTTTGGATTGAGTGCACTACCTCAACAAGTTCGAGAAGATGGGTTACTTCACACAACATGTGGAACTCCAAACTATGTTGCTCCAGAGGTGATCAATAACAAAGGCTATGATGGAGCTAAGGCAGACCTATGGTCATGTGGGGTAATCTTATTTGTTCTTATGGCTGGCTATTTGCCTTTTGAAGAATCGAACCTCATGGCTTTGTATAAAAAGATATTCAAGGCCGACTTTACGTTTCCTCCCTGGTTATCCTCAAGTGCAAAGAAGCTAATTAAAAGAATCTTGGACCCTAACCCGGAGACGAGGATTACAATTGCTGAAGTCATTGAGAATGAGTGGTTTAAGAAGGGATATAAGCCACCTAGTTTCGAACAAGCAGATGTTAGTCTTGATGATGTGGACGCCATCTTTGATGAATCAGGGGACTCTCAAAACCTTGTTGTGGAGAGGCGTGAAGAGCGACCTACGACGCCTGTCACTTTGAATGCTTTTGAACTCATCTCTACATCTCAGGGTCTCAACCTCGGTACTCTCTTTGAAAAGCCAATGGGCCTTGTTAAACGGGAGACAAGATTCACATCGAAGCGTCCTGCCAATGAGATTATCTCAAAAATTGAGGAAACTGCTATGCCTTTGGGGTTTGATGTAAAGAAAAATAACTTCAAGATGAAACTTCAAGGGGAGAAAACTGGACGCAAGGGTCATTTATCCATTGCAACAGAGATTTTTGAGGTGGCCCCTTCGCTATACATGGTTGAGCTTCGAAAATCTGGGGGAGATACTTTGGAATTTCACAAGTTCTACAAGAACCTCTCAACTGGGTTGAAAGATATTGTTTGGAAATCAGGAGATGAATCAAAGGAGGAAGTGAATAATGGGTCTGGTGTGGCATCAACTTGA | 1368 | 41.96 | MASRSSTGRTRVGKYELGRTLGEGTFAKVKFARNVETGENVAIKILDKEKVLKHKMIGQIKREISTMKLIRHPNVIRMHEVMASKTKIYIVLEFVTGGELFDKIASKGRLKEDEARKYFQQLINAVDYCHSRCVFHRDLKPENLLLDANGVLKVSDFGLSALPQQVREDGLLHTTCGTPNYVAPEVINNKGYDGAKADLWSCGVILFVLMAGYLPFEESNLMALYKKIFKADFTFPPWLSSSAKKLIKRILDPNPETRITIAEVIENEWFKKGYKPPSFEQADVSLDDVDAIFDESGDSQNLVVERREERPTTPVTLNAFELISTSQGLNLGTLFEKPMGLVKRETRFTSKRPANEIISKIEETAMPLGFDVKKNNFKMKLQGEKTGRKGHLSIATEIFEVAPSLYMVELRKSGGDTLEFHKFYKNLSTGLKDIVWKSGDESKEEVNNGSGVAST* | 456 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 6827853 | 6838091 | + | Vvi10g470 | Vvi10g470 | 771069 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi10g470 | 455 | CDD | CIPK_C | 318 | 433 | - | - | |
Vvi10g470 | 455 | CDD | STKc_SnRK3 | 14 | 269 | - | - | |
Vvi10g470 | 455 | ProSiteProfiles | Protein kinase domain profile. | 15 | 270 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vvi10g470 | 455 | PANTHER | NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE | 9 | 442 | - | - | |
Vvi10g470 | 455 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 134 | 146 | IPR008271 | GO:0004672|GO:0006468 | |
Vvi10g470 | 455 | Pfam | Protein kinase domain | 15 | 270 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vvi10g470 | 455 | ProSiteProfiles | NAF domain profile. | 312 | 336 | IPR018451 | GO:0007165 | |
Vvi10g470 | 455 | ProSitePatterns | Protein kinases ATP-binding region signature. | 21 | 44 | IPR017441 | GO:0005524 | |
Vvi10g470 | 455 | Gene3D | Phosphorylase Kinase; domain 1 | 4 | 94 | - | - | |
Vvi10g470 | 455 | SMART | serkin_6 | 15 | 270 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vvi10g470 | 455 | Gene3D | Transferase(Phosphotransferase) domain 1 | 95 | 277 | - | - | |
Vvi10g470 | 455 | PANTHER | SERINE/THREONINE KINASE | 9 | 442 | - | - | |
Vvi10g470 | 455 | Gene3D | Kinase associated domain 1, KA1 | 312 | 437 | - | - | |
Vvi10g470 | 455 | SUPERFAMILY | Protein kinase-like (PK-like) | 12 | 284 | IPR011009 | - | |
Vvi10g470 | 455 | Pfam | NAF domain | 314 | 374 | IPR004041 | GO:0007165 |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
75993 | PF00069 | Pkinase | 2.70E-75 | CL0016 | Vvi | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi10g470 | - | - | vvi:100253180 | 895.19 |