Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g480 ATGAGGTTGTCTCCTGCTGGGTTCACACACCAGACCCAGGAAGGGGAGAAGAGATGTCTGAATTCTGAACTTTGGCATGCATGTGCGGGCCCTCTTGTTTCCCTACCTGCTGTTGGAAGCAGAGTGGTTTATTTTCCACAAGGTCATAGTGAGCAGGTTGCTGCATCAACGAACAAGGAAGTGGATGCTCATATCCCTAACTATCCTAGCTTACCCCCACAACTTATCTGTCAGCTTCACAATGTGACCATGCATGCAGATGTGGAGACGGATGAAGTATATGCGCAGATGACGTTACAACCATTGAGTCCACAAGAGCAAAAGGATGCGTACCTCCCAGCAGAGTTGGGTGTGCCCAGCAAACAGCCATCGAATTATTTCTGTAAAACATTGACAGCTAGTGACACAAGTACACATGGAGGCTTCTCTGTTCCTCGCCGAGCAGCTGAAAAAGTGTTTCCTCCTTTGGACTTTTCACAGCAGCCTCCAGCCCAAGAGTTAATTGCAAGGGATCTTCATGATAATGAATGGAAATTTAGGCATATATTTCGAGGTCAGCCCAAAAGGCATCTTCTTACAACAGGTTGGAGTGTATTTGTAAGTGCGAAAAGACTTGTTGCTGGGGATTCGGTTCTTTTTATCTGGAATGAGAAGAATCAGTTACTACTTGGTATCCGGCGTGCTAATCGACCACAAACTGTTATGCCATCATCGGTTTTATCAAGTGATAGCATGCACTTAGGGCTTTTGGCTGCTGCAGCTCATGCAGCTGCAACAAATAGCCGTTTCACTATATTTTATAATCCAAGGGCTAGCCCATCTGAATTTGTCATACCATTGGCCAAGTATGCTAAAGCAGTCTATCATACACGTGTTTCTGTTGGCATGCGCTTTCGGATGCTGTTTGAAACTGAAGAATCAAGTGTCCGTCGCTACATGGGCACGATAACTGGCATAAGCGATTTAGATCCTGTTCGGTGGCCAAACTCCCATTGGCGCTCAGTGAAGGTGGGCTGGGATGAGTCCACGGCAGGGGAGAGGCAACCCAGAGTGTCCCTATGGGAGATTGAACCTTTAACGACCTTCCCAATGTATCCTTCTCCATTTCCTCTCAGACTAAAGAGACCATGGCCACCAGGGCTACCCTCTCTCCATGGCATCAAGGATGATGATTTAGGAATGAATTCACCACTTATGTGGCTCCGAGGAGATAATGTAGACCGTGGAATCCAATCTCTGAACTTTCAGGGAATCGGGGTTAATCCTTGGATGCAACCAAGGCTTGACGCTTCCATGCTGGGTCTGCAGACAGACATGTACCAAGCTATGGCTGCTGCTGCTCTTCAGGAGATGAGGGCTGTGGATCCATCCAAACAGGCACCTGCACCCCTTCTGCATTACCAGCAACCCCAAAATGTTGCCAGCAGGTCTTCTTGTATAATGCAGCCCCAGATGTTGCAGCAATCTCAGCCTCAACAGGCCTTTCTTCAAGGCATACATGAAAACACCAACCAGGCTCAATCTCAGACTCACAGCAGCAGCCCGCCCCCCCGCCGCAACAACCACAACAGCAATTGGCACCGATTTTTCACTTAA 1596 48.06 MRLSPAGFTHQTQEGEKRCLNSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVAASTNKEVDAHIPNYPSLPPQLICQLHNVTMHADVETDEVYAQMTLQPLSPQEQKDAYLPAELGVPSKQPSNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRANRPQTVMPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLAKYAKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPPGLPSLHGIKDDDLGMNSPLMWLRGDNVDRGIQSLNFQGIGVNPWMQPRLDASMLGLQTDMYQAMAAAALQEMRAVDPSKQAPAPLLHYQQPQNVASRSSCIMQPQMLQQSQPQQAFLQGIHENTNQAQSQTHSSSPPPRRNNHNSNWHRFFT* 532
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 6957709 6965185 - Vvi10g480 Vvi10g480 771079
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g480 531 SMART B3_2 127 229 IPR003340 GO:0003677
Vvi10g480 531 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 503 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vvi10g480 531 Pfam Auxin response factor 253 336 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vvi10g480 531 Pfam B3 DNA binding domain 127 228 IPR003340 GO:0003677
Vvi10g480 531 PANTHER AUXIN RESPONSE FACTOR 6 1 503 - -
Vvi10g480 531 SUPERFAMILY DNA-binding pseudobarrel domain 112 256 IPR015300 -
Vvi10g480 531 MobiDBLite consensus disorder prediction 503 531 - -
Vvi10g480 531 CDD B3_DNA 126 227 IPR003340 GO:0003677
Vvi10g480 531 ProSiteProfiles B3 DNA-binding domain profile. 127 229 IPR003340 GO:0003677
Vvi10g480 531 Gene3D - 125 228 IPR015300 -
Vvi10g480 531 Gene3D - 291 363 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13674 PF02362 B3 9.40E-22 CL0405 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g480 - - vvi:100242923 1001.12