Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g502 ATGATCTCCGTACGCTGTACCATAAATACCCTCAACCACCACCTCCTGTCTCTCTCTAAACTCCCATTTCTCTCTCTCCAGCGAAACTCGAACCAGAGAGGAGAGAAGAGAAGACCCCAAAAAGCCTCCTTGCCCCGTCAACGAATTTGGAGAATATATTTTGGGTCTTTGGCTACAGTTGAGAATCGATCAAGTGGCGTGAGGAAGTGGGGGTTGGAGATAAAAGGGGTTAGGTTTTGGAATATGGTGGAGTCGCAACGGGATTCGGACGGTGAGGTTTTGAATTCGAGTCACAGCTCAATGAGCAGTGAGAGTTGCAGCAGTTTGAGATTGAGTTTCAGTCGGCTTTCGTTCGAGCACTCGCCGGAGAATCTGACGCTGAAGCCGCATCGCTCGTCGGACTCGGCGTACGAGGCCATCCGCTCCGCCGCATTTAGCCGGAAGTCCGGGCTCAGTTTCAGGGACTTCAAGCTGGTTCGCCGGATCGGCTCCGGAGACATCGGGACCGTGTACCTCTGCCGGTTGCGGAGCTCGTCGGACGATGACGGGTGCTTCTACGCCATGAAGTACTGTTCTGGTGGCGACCTGCACTCCCTCAAACACAAACAGCCTCAGAAGCGCTTTTCTCTCAGCTCTGCAAGGTTTTACGCTGCCGAGGTTCTTGTAGCCCTGGAGTACCTCCACATGTTAGGCATCATCTACAGAGACCTAAAGCCTGAGAACGTATTGGTCAGATCCGACGGTCACATCATGCTCTCCGACTTTGACCTCTCCCTCTGCTCCAATGCGATCCCAGCCTCCTGCTCCTTCGTTGGGACCCACGAGTACGTGTCACCGGAGGTGGCATCCGGGAGGTCCCACGGCAACGGCGTGGACTGGTGGGCCCTGGGCATCTTCATCTACGAGATGGTGTACGGGGCCACCCCGTTCGCGGGCGCAACCAACGAGGCTACGCTGCGAAACATAGTGAAAAAGCCTCTGAGCTTCCCAACAGAGACGCCGGCGAGTGTGAGTGAGATGCACGCGCGGGACCTAATGTCGGGACTATTGGTCAAAGACCCGGCGAGTCGGCTCGGGTCAAAACGAGGCGCCGCTGACGTCAAGACCCACCCCTTCTTTAAAGGCCTCAACTTCGCTCTCGTACGTTCTCTTACACCGCCAGAGATTCCGGGTCTAAGGCGACACAAAACGCCGTCGTTTCGGCCAGACTCTGCAAATTCAAACAAGGGGCGATATCATCATCAGCAGCAGCAGCAGCAACAACAGCAACAGCAATCAACGGCGTTTGATTACTTTTGA 1299 55.2 MISVRCTINTLNHHLLSLSKLPFLSLQRNSNQRGEKRRPQKASLPRQRIWRIYFGSLATVENRSSGVRKWGLEIKGVRFWNMVESQRDSDGEVLNSSHSSMSSESCSSLRLSFSRLSFEHSPENLTLKPHRSSDSAYEAIRSAAFSRKSGLSFRDFKLVRRIGSGDIGTVYLCRLRSSSDDDGCFYAMKYCSGGDLHSLKHKQPQKRFSLSSARFYAAEVLVALEYLHMLGIIYRDLKPENVLVRSDGHIMLSDFDLSLCSNAIPASCSFVGTHEYVSPEVASGRSHGNGVDWWALGIFIYEMVYGATPFAGATNEATLRNIVKKPLSFPTETPASVSEMHARDLMSGLLVKDPASRLGSKRGAADVKTHPFFKGLNFALVRSLTPPEIPGLRRHKTPSFRPDSANSNKGRYHHQQQQQQQQQQQSTAFDYF* 433
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 7410408 7412864 - Vvi10g502 Vvi10g502 771101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g502 432 MobiDBLite consensus disorder prediction 388 432 - -
Vvi10g502 432 ProSiteProfiles Protein kinase domain profile. 79 373 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g502 432 MobiDBLite consensus disorder prediction 401 432 - -
Vvi10g502 432 SMART serkin_6 156 373 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g502 432 Pfam Protein kinase domain 181 373 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g502 432 Gene3D Transferase(Phosphotransferase) domain 1 195 391 - -
Vvi10g502 432 SUPERFAMILY Protein kinase-like (PK-like) 147 413 IPR011009 -
Vvi10g502 432 Gene3D Phosphorylase Kinase; domain 1 179 395 - -
Vvi10g502 432 ProSitePatterns Serine/Threonine protein kinases active-site signature. 232 244 IPR008271 GO:0004672|GO:0006468
Vvi10g502 432 PANTHER SERINE/THREONINE KINASE FAMILY PROTEIN 93 180 - -
Vvi10g502 432 PANTHER SERINE/THREONINE KINASE FAMILY PROTEIN 187 266 - -
Vvi10g502 432 PANTHER SERINE/THREONINE KINASE FAMILY PROTEIN 267 405 - -
Vvi10g502 432 PANTHER FLIPPASE KINASE 1-RELATED 187 266 - -
Vvi10g502 432 PANTHER FLIPPASE KINASE 1-RELATED 267 405 - -
Vvi10g502 432 PANTHER FLIPPASE KINASE 1-RELATED 93 180 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75995 PF00069 Pkinase 5.10E-43 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g502 - - vvi:100254888 591.267